Model info
Transcription factorCdx2
ModelCDX2_MOUSE.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length14
Quality
A
Motif rank
0
ConsensusnnbTTTATKRShbh
Best auROC (human)0.9268851597883484
Best auROC (mouse)0.9890354943537498
Peak sets in benchmark (human)13
Peak sets in benchmark (mouse)23
Aligned words500
TF familyHOX-related factors{3.1.1}
TF subfamilyCDX (Caudal type homeobox){3.1.1.9}
MGI88361
EntrezGene12591
UniProt IDCDX2_MOUSE
UniProt ACP43241
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 9.80911
0.0005 12.23262
0.0001 16.22013
GTEx tissue expression atlas Cdx2 expression
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0120.024.044.034.025.022.07.035.014.031.040.035.026.023.0100.020.0
025.017.014.049.017.017.02.064.015.026.032.0118.010.030.027.057.0
030.00.01.046.01.01.01.087.01.03.01.070.01.00.05.0282.0
040.00.00.03.00.01.00.03.00.01.00.07.01.00.00.0484.0
050.00.00.01.00.00.00.02.00.00.00.00.05.00.00.0492.0
065.00.00.00.00.00.00.00.00.00.00.00.0493.02.00.00.0
070.066.08.0424.00.00.00.02.00.00.00.00.00.00.00.00.0
080.00.00.00.032.01.09.024.01.00.05.02.039.02.0209.0176.0
0925.00.045.02.03.00.00.00.093.08.0110.012.048.03.0142.09.0
103.0123.026.017.00.010.00.01.017.0182.055.043.02.015.04.02.0
114.04.07.07.059.0151.010.0110.010.034.024.017.09.023.021.010.0
126.031.029.016.042.051.011.0108.06.021.016.019.014.037.046.047.0
1310.021.08.029.037.028.06.069.014.027.033.028.028.062.034.066.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.439-0.260.3390.083-0.22-0.346-1.4540.112-0.788-0.0080.2440.112-0.181-0.3021.155-0.439
02-1.77-0.599-0.7880.445-0.599-0.599-2.5840.711-0.721-0.1810.0231.32-1.114-0.04-0.1440.595
03-4.4-4.4-3.1260.383-3.126-3.126-3.1261.016-3.126-2.234-3.1260.8-3.126-4.4-1.772.189
04-4.4-4.4-4.4-2.234-4.4-3.126-4.4-2.234-4.4-3.126-4.4-1.454-3.126-4.4-4.42.729
05-4.4-4.4-4.4-3.126-4.4-4.4-4.4-2.584-4.4-4.4-4.4-4.4-1.77-4.4-4.42.745
06-1.77-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.42.747-2.584-4.4-4.4
07-4.40.741-1.3282.596-4.4-4.4-4.4-2.584-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4
08-4.4-4.4-4.4-4.40.023-3.126-1.215-0.26-3.126-4.4-1.77-2.5840.219-2.5841.891.718
09-0.22-4.40.361-2.584-2.234-4.4-4.4-4.41.082-1.3281.25-0.9380.425-2.2341.504-1.215
10-2.2341.361-0.181-0.599-4.4-1.114-4.4-3.126-0.5991.7520.560.316-2.584-0.721-1.975-2.584
11-1.975-1.975-1.454-1.4540.631.565-1.1141.25-1.1140.083-0.26-0.599-1.215-0.302-0.392-1.114
12-1.6-0.008-0.074-0.6580.2930.485-1.0221.231-1.6-0.392-0.658-0.49-0.7880.1670.3830.404
13-1.114-0.392-1.328-0.0740.167-0.108-1.60.785-0.788-0.1440.054-0.108-0.1080.6790.0830.741