Transcription factor | Cdx2 | ||||||||
Model | CDX2_MOUSE.H11DI.0.A | ||||||||
Model type | Dinucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 14 | ||||||||
Quality | A | ||||||||
Motif rank | 0 | ||||||||
Consensus | nnbTTTATKRShbh | ||||||||
Best auROC (human) | 0.927 | ||||||||
Best auROC (mouse) | 0.989 | ||||||||
Peak sets in benchmark (human) | 13 | ||||||||
Peak sets in benchmark (mouse) | 23 | ||||||||
Aligned words | 500 | ||||||||
TF family | HOX-related factors {3.1.1} | ||||||||
TF subfamily | CDX (Caudal type homeobox) {3.1.1.9} | ||||||||
MGI | MGI:88361 | ||||||||
EntrezGene | GeneID:12591 (SSTAR profile) | ||||||||
UniProt ID | CDX2_MOUSE | ||||||||
UniProt AC | P43241 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | Cdx2 expression | ||||||||
Motifs in JASPAR |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | 20.0 | 24.0 | 44.0 | 34.0 | 25.0 | 22.0 | 7.0 | 35.0 | 14.0 | 31.0 | 40.0 | 35.0 | 26.0 | 23.0 | 100.0 | 20.0 |
02 | 5.0 | 17.0 | 14.0 | 49.0 | 17.0 | 17.0 | 2.0 | 64.0 | 15.0 | 26.0 | 32.0 | 118.0 | 10.0 | 30.0 | 27.0 | 57.0 |
03 | 0.0 | 0.0 | 1.0 | 46.0 | 1.0 | 1.0 | 1.0 | 87.0 | 1.0 | 3.0 | 1.0 | 70.0 | 1.0 | 0.0 | 5.0 | 282.0 |
04 | 0.0 | 0.0 | 0.0 | 3.0 | 0.0 | 1.0 | 0.0 | 3.0 | 0.0 | 1.0 | 0.0 | 7.0 | 1.0 | 0.0 | 0.0 | 484.0 |
05 | 0.0 | 0.0 | 0.0 | 1.0 | 0.0 | 0.0 | 0.0 | 2.0 | 0.0 | 0.0 | 0.0 | 0.0 | 5.0 | 0.0 | 0.0 | 492.0 |
06 | 5.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 493.0 | 2.0 | 0.0 | 0.0 |
07 | 0.0 | 66.0 | 8.0 | 424.0 | 0.0 | 0.0 | 0.0 | 2.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
08 | 0.0 | 0.0 | 0.0 | 0.0 | 32.0 | 1.0 | 9.0 | 24.0 | 1.0 | 0.0 | 5.0 | 2.0 | 39.0 | 2.0 | 209.0 | 176.0 |
09 | 25.0 | 0.0 | 45.0 | 2.0 | 3.0 | 0.0 | 0.0 | 0.0 | 93.0 | 8.0 | 110.0 | 12.0 | 48.0 | 3.0 | 142.0 | 9.0 |
10 | 3.0 | 123.0 | 26.0 | 17.0 | 0.0 | 10.0 | 0.0 | 1.0 | 17.0 | 182.0 | 55.0 | 43.0 | 2.0 | 15.0 | 4.0 | 2.0 |
11 | 4.0 | 4.0 | 7.0 | 7.0 | 59.0 | 151.0 | 10.0 | 110.0 | 10.0 | 34.0 | 24.0 | 17.0 | 9.0 | 23.0 | 21.0 | 10.0 |
12 | 6.0 | 31.0 | 29.0 | 16.0 | 42.0 | 51.0 | 11.0 | 108.0 | 6.0 | 21.0 | 16.0 | 19.0 | 14.0 | 37.0 | 46.0 | 47.0 |
13 | 10.0 | 21.0 | 8.0 | 29.0 | 37.0 | 28.0 | 6.0 | 69.0 | 14.0 | 27.0 | 33.0 | 28.0 | 28.0 | 62.0 | 34.0 | 66.0 |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | -0.439 | -0.26 | 0.339 | 0.083 | -0.22 | -0.346 | -1.454 | 0.112 | -0.788 | -0.008 | 0.244 | 0.112 | -0.181 | -0.302 | 1.155 | -0.439 |
02 | -1.77 | -0.599 | -0.788 | 0.445 | -0.599 | -0.599 | -2.584 | 0.711 | -0.721 | -0.181 | 0.023 | 1.32 | -1.114 | -0.04 | -0.144 | 0.595 |
03 | -4.4 | -4.4 | -3.126 | 0.383 | -3.126 | -3.126 | -3.126 | 1.016 | -3.126 | -2.234 | -3.126 | 0.8 | -3.126 | -4.4 | -1.77 | 2.189 |
04 | -4.4 | -4.4 | -4.4 | -2.234 | -4.4 | -3.126 | -4.4 | -2.234 | -4.4 | -3.126 | -4.4 | -1.454 | -3.126 | -4.4 | -4.4 | 2.729 |
05 | -4.4 | -4.4 | -4.4 | -3.126 | -4.4 | -4.4 | -4.4 | -2.584 | -4.4 | -4.4 | -4.4 | -4.4 | -1.77 | -4.4 | -4.4 | 2.745 |
06 | -1.77 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | 2.747 | -2.584 | -4.4 | -4.4 |
07 | -4.4 | 0.741 | -1.328 | 2.596 | -4.4 | -4.4 | -4.4 | -2.584 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 |
08 | -4.4 | -4.4 | -4.4 | -4.4 | 0.023 | -3.126 | -1.215 | -0.26 | -3.126 | -4.4 | -1.77 | -2.584 | 0.219 | -2.584 | 1.89 | 1.718 |
09 | -0.22 | -4.4 | 0.361 | -2.584 | -2.234 | -4.4 | -4.4 | -4.4 | 1.082 | -1.328 | 1.25 | -0.938 | 0.425 | -2.234 | 1.504 | -1.215 |
10 | -2.234 | 1.361 | -0.181 | -0.599 | -4.4 | -1.114 | -4.4 | -3.126 | -0.599 | 1.752 | 0.56 | 0.316 | -2.584 | -0.721 | -1.975 | -2.584 |
11 | -1.975 | -1.975 | -1.454 | -1.454 | 0.63 | 1.565 | -1.114 | 1.25 | -1.114 | 0.083 | -0.26 | -0.599 | -1.215 | -0.302 | -0.392 | -1.114 |
12 | -1.6 | -0.008 | -0.074 | -0.658 | 0.293 | 0.485 | -1.022 | 1.231 | -1.6 | -0.392 | -0.658 | -0.49 | -0.788 | 0.167 | 0.383 | 0.404 |
13 | -1.114 | -0.392 | -1.328 | -0.074 | 0.167 | -0.108 | -1.6 | 0.785 | -0.788 | -0.144 | 0.054 | -0.108 | -0.108 | 0.679 | 0.083 | 0.741 |