Model info
| Transcription factor | Nr2f1 | ||||||||
| Model | COT1_MOUSE.H11MO.0.B | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | Integrative | ||||||||
| Model release | HOCOMOCOv9 | ||||||||
| Model length | 9 | ||||||||
| Quality | B | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | YWRAGGTCA | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 86 | ||||||||
| TF family | RXR-related receptors (NR2) {2.1.3} | ||||||||
| TF subfamily | COUP-like receptors (NR2F) {2.1.3.5} | ||||||||
| MGI | MGI:1352451 | ||||||||
| EntrezGene | GeneID:13865 (SSTAR profile) | ||||||||
| UniProt ID | COT1_MOUSE | ||||||||
| UniProt AC | Q60632 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Nr2f1 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 8.073 | 52.971 | 7.156 | 14.966 |
| 02 | 57.043 | 8.97 | 8.094 | 9.058 |
| 03 | 54.619 | 4.172 | 17.615 | 6.759 |
| 04 | 66.84 | 0.0 | 16.326 | 0.0 |
| 05 | 0.751 | 0.0 | 82.415 | 0.0 |
| 06 | 0.0 | 0.0 | 63.323 | 19.843 |
| 07 | 0.751 | 7.139 | 2.336 | 72.939 |
| 08 | 0.834 | 75.61 | 0.751 | 5.97 |
| 09 | 70.62 | 7.08 | 3.776 | 1.69 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.869 | 0.904 | -0.975 | -0.309 |
| 02 | 0.977 | -0.776 | -0.867 | -0.768 |
| 03 | 0.934 | -1.423 | -0.157 | -1.024 |
| 04 | 1.132 | -2.986 | -0.228 | -2.986 |
| 05 | -2.468 | -2.986 | 1.339 | -2.986 |
| 06 | -2.986 | -2.986 | 1.079 | -0.044 |
| 07 | -2.468 | -0.977 | -1.85 | 1.218 |
| 08 | -2.424 | 1.254 | -2.468 | -1.13 |
| 09 | 1.187 | -0.984 | -1.501 | -2.058 |