Model info
Transcription factorFoxa1
ModelFOXA1_MOUSE.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length16
Quality
A
Motif rank
0
ConsensusnbnnTGTTTACWYWdn
Best auROC (human)0.987
Best auROC (mouse)0.984
Peak sets in benchmark (human)199
Peak sets in benchmark (mouse)28
Aligned words510
TF familyForkhead box (FOX) factors {3.3.1}
TF subfamilyFOXA {3.3.1.1}
MGIMGI:1347472
EntrezGeneGeneID:15375
(SSTAR profile)
UniProt IDFOXA1_MOUSE
UniProt ACP35582
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 8.813860000000002
0.0005 11.12221
0.0001 16.07356
GTEx tissue expression atlas Foxa1 expression
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
016.033.025.012.026.051.05.043.016.050.031.022.014.079.043.044.0
0214.021.026.01.051.047.010.0105.011.040.031.022.08.056.042.015.0
0332.015.026.011.046.027.010.081.025.028.027.029.012.036.047.048.0
043.00.00.0112.00.01.00.0105.01.00.00.0109.01.00.00.0168.0
053.00.02.00.01.00.00.00.00.00.00.00.0149.01.0343.01.0
061.00.00.0152.00.00.00.01.03.01.01.0340.00.00.00.01.0
070.00.00.04.00.00.00.01.00.00.00.01.01.00.020.0473.0
080.00.00.01.00.00.00.00.00.00.03.017.01.01.083.0394.0
090.01.00.00.01.00.00.00.086.00.00.00.0380.05.025.02.0
100.0409.03.055.00.06.00.00.00.021.00.04.00.02.00.00.0
110.00.00.00.0192.079.02.0165.01.01.00.01.012.03.00.044.0
1216.077.020.092.016.027.01.039.00.00.00.02.09.049.016.0136.0
1327.00.01.013.0105.03.02.043.025.01.07.04.091.06.014.0158.0
1467.025.0119.037.03.02.02.03.05.04.09.06.032.044.082.060.0
1528.028.034.017.018.017.07.033.025.068.052.067.015.031.037.023.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-1.60.054-0.22-0.938-0.1810.485-1.770.316-0.6580.465-0.008-0.346-0.7880.920.3160.339
02-0.788-0.392-0.181-3.1260.4850.404-1.1141.203-1.0220.244-0.008-0.346-1.3280.5780.293-0.721
030.023-0.721-0.181-1.0220.383-0.144-1.1140.945-0.22-0.108-0.144-0.074-0.9380.140.4040.425
04-2.234-4.4-4.41.268-4.4-3.126-4.41.203-3.126-4.4-4.41.241-3.126-4.4-4.41.672
05-2.234-4.4-2.584-4.4-3.126-4.4-4.4-4.4-4.4-4.4-4.4-4.41.552-3.1262.384-3.126
06-3.126-4.4-4.41.572-4.4-4.4-4.4-3.126-2.234-3.126-3.1262.376-4.4-4.4-4.4-3.126
07-4.4-4.4-4.4-1.975-4.4-4.4-4.4-3.126-4.4-4.4-4.4-3.126-3.126-4.4-0.4392.706
08-4.4-4.4-4.4-3.126-4.4-4.4-4.4-4.4-4.4-4.4-2.234-0.599-3.126-3.1260.9692.523
09-4.4-3.126-4.4-4.4-3.126-4.4-4.4-4.41.004-4.4-4.4-4.42.487-1.77-0.22-2.584
10-4.42.56-2.2340.56-4.4-1.6-4.4-4.4-4.4-0.392-4.4-1.975-4.4-2.584-4.4-4.4
11-4.4-4.4-4.4-4.41.8050.92-2.5841.654-3.126-3.126-4.4-3.126-0.938-2.234-4.40.339
12-0.6580.894-0.4391.072-0.658-0.144-3.1260.219-4.4-4.4-4.4-2.584-1.2150.445-0.6581.461
13-0.144-4.4-3.126-0.861.203-2.234-2.5840.316-0.22-3.126-1.454-1.9751.061-1.6-0.7881.611
140.756-0.221.3280.167-2.234-2.584-2.584-2.234-1.77-1.975-1.215-1.60.0230.3390.9570.646
15-0.108-0.1080.083-0.599-0.543-0.599-1.4540.054-0.220.7710.5040.756-0.721-0.0080.167-0.302