Transcription factor | Foxa1 | ||||||||
Model | FOXA1_MOUSE.H11DI.0.A | ||||||||
Model type | Dinucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 16 | ||||||||
Quality | A | ||||||||
Motif rank | 0 | ||||||||
Consensus | nbnnTGTTTACWYWdn | ||||||||
Best auROC (human) | 0.987 | ||||||||
Best auROC (mouse) | 0.984 | ||||||||
Peak sets in benchmark (human) | 199 | ||||||||
Peak sets in benchmark (mouse) | 28 | ||||||||
Aligned words | 510 | ||||||||
TF family | Forkhead box (FOX) factors {3.3.1} | ||||||||
TF subfamily | FOXA {3.3.1.1} | ||||||||
MGI | MGI:1347472 | ||||||||
EntrezGene | GeneID:15375 (SSTAR profile) | ||||||||
UniProt ID | FOXA1_MOUSE | ||||||||
UniProt AC | P35582 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | Foxa1 expression | ||||||||
Motifs in JASPAR |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | 6.0 | 33.0 | 25.0 | 12.0 | 26.0 | 51.0 | 5.0 | 43.0 | 16.0 | 50.0 | 31.0 | 22.0 | 14.0 | 79.0 | 43.0 | 44.0 |
02 | 14.0 | 21.0 | 26.0 | 1.0 | 51.0 | 47.0 | 10.0 | 105.0 | 11.0 | 40.0 | 31.0 | 22.0 | 8.0 | 56.0 | 42.0 | 15.0 |
03 | 32.0 | 15.0 | 26.0 | 11.0 | 46.0 | 27.0 | 10.0 | 81.0 | 25.0 | 28.0 | 27.0 | 29.0 | 12.0 | 36.0 | 47.0 | 48.0 |
04 | 3.0 | 0.0 | 0.0 | 112.0 | 0.0 | 1.0 | 0.0 | 105.0 | 1.0 | 0.0 | 0.0 | 109.0 | 1.0 | 0.0 | 0.0 | 168.0 |
05 | 3.0 | 0.0 | 2.0 | 0.0 | 1.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 149.0 | 1.0 | 343.0 | 1.0 |
06 | 1.0 | 0.0 | 0.0 | 152.0 | 0.0 | 0.0 | 0.0 | 1.0 | 3.0 | 1.0 | 1.0 | 340.0 | 0.0 | 0.0 | 0.0 | 1.0 |
07 | 0.0 | 0.0 | 0.0 | 4.0 | 0.0 | 0.0 | 0.0 | 1.0 | 0.0 | 0.0 | 0.0 | 1.0 | 1.0 | 0.0 | 20.0 | 473.0 |
08 | 0.0 | 0.0 | 0.0 | 1.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 3.0 | 17.0 | 1.0 | 1.0 | 83.0 | 394.0 |
09 | 0.0 | 1.0 | 0.0 | 0.0 | 1.0 | 0.0 | 0.0 | 0.0 | 86.0 | 0.0 | 0.0 | 0.0 | 380.0 | 5.0 | 25.0 | 2.0 |
10 | 0.0 | 409.0 | 3.0 | 55.0 | 0.0 | 6.0 | 0.0 | 0.0 | 0.0 | 21.0 | 0.0 | 4.0 | 0.0 | 2.0 | 0.0 | 0.0 |
11 | 0.0 | 0.0 | 0.0 | 0.0 | 192.0 | 79.0 | 2.0 | 165.0 | 1.0 | 1.0 | 0.0 | 1.0 | 12.0 | 3.0 | 0.0 | 44.0 |
12 | 16.0 | 77.0 | 20.0 | 92.0 | 16.0 | 27.0 | 1.0 | 39.0 | 0.0 | 0.0 | 0.0 | 2.0 | 9.0 | 49.0 | 16.0 | 136.0 |
13 | 27.0 | 0.0 | 1.0 | 13.0 | 105.0 | 3.0 | 2.0 | 43.0 | 25.0 | 1.0 | 7.0 | 4.0 | 91.0 | 6.0 | 14.0 | 158.0 |
14 | 67.0 | 25.0 | 119.0 | 37.0 | 3.0 | 2.0 | 2.0 | 3.0 | 5.0 | 4.0 | 9.0 | 6.0 | 32.0 | 44.0 | 82.0 | 60.0 |
15 | 28.0 | 28.0 | 34.0 | 17.0 | 18.0 | 17.0 | 7.0 | 33.0 | 25.0 | 68.0 | 52.0 | 67.0 | 15.0 | 31.0 | 37.0 | 23.0 |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | -1.6 | 0.054 | -0.22 | -0.938 | -0.181 | 0.485 | -1.77 | 0.316 | -0.658 | 0.465 | -0.008 | -0.346 | -0.788 | 0.92 | 0.316 | 0.339 |
02 | -0.788 | -0.392 | -0.181 | -3.126 | 0.485 | 0.404 | -1.114 | 1.203 | -1.022 | 0.244 | -0.008 | -0.346 | -1.328 | 0.578 | 0.293 | -0.721 |
03 | 0.023 | -0.721 | -0.181 | -1.022 | 0.383 | -0.144 | -1.114 | 0.945 | -0.22 | -0.108 | -0.144 | -0.074 | -0.938 | 0.14 | 0.404 | 0.425 |
04 | -2.234 | -4.4 | -4.4 | 1.268 | -4.4 | -3.126 | -4.4 | 1.203 | -3.126 | -4.4 | -4.4 | 1.241 | -3.126 | -4.4 | -4.4 | 1.672 |
05 | -2.234 | -4.4 | -2.584 | -4.4 | -3.126 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | 1.552 | -3.126 | 2.384 | -3.126 |
06 | -3.126 | -4.4 | -4.4 | 1.572 | -4.4 | -4.4 | -4.4 | -3.126 | -2.234 | -3.126 | -3.126 | 2.376 | -4.4 | -4.4 | -4.4 | -3.126 |
07 | -4.4 | -4.4 | -4.4 | -1.975 | -4.4 | -4.4 | -4.4 | -3.126 | -4.4 | -4.4 | -4.4 | -3.126 | -3.126 | -4.4 | -0.439 | 2.706 |
08 | -4.4 | -4.4 | -4.4 | -3.126 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -2.234 | -0.599 | -3.126 | -3.126 | 0.969 | 2.523 |
09 | -4.4 | -3.126 | -4.4 | -4.4 | -3.126 | -4.4 | -4.4 | -4.4 | 1.004 | -4.4 | -4.4 | -4.4 | 2.487 | -1.77 | -0.22 | -2.584 |
10 | -4.4 | 2.56 | -2.234 | 0.56 | -4.4 | -1.6 | -4.4 | -4.4 | -4.4 | -0.392 | -4.4 | -1.975 | -4.4 | -2.584 | -4.4 | -4.4 |
11 | -4.4 | -4.4 | -4.4 | -4.4 | 1.805 | 0.92 | -2.584 | 1.654 | -3.126 | -3.126 | -4.4 | -3.126 | -0.938 | -2.234 | -4.4 | 0.339 |
12 | -0.658 | 0.894 | -0.439 | 1.072 | -0.658 | -0.144 | -3.126 | 0.219 | -4.4 | -4.4 | -4.4 | -2.584 | -1.215 | 0.445 | -0.658 | 1.461 |
13 | -0.144 | -4.4 | -3.126 | -0.86 | 1.203 | -2.234 | -2.584 | 0.316 | -0.22 | -3.126 | -1.454 | -1.975 | 1.061 | -1.6 | -0.788 | 1.611 |
14 | 0.756 | -0.22 | 1.328 | 0.167 | -2.234 | -2.584 | -2.584 | -2.234 | -1.77 | -1.975 | -1.215 | -1.6 | 0.023 | 0.339 | 0.957 | 0.646 |
15 | -0.108 | -0.108 | 0.083 | -0.599 | -0.543 | -0.599 | -1.454 | 0.054 | -0.22 | 0.771 | 0.504 | 0.756 | -0.721 | -0.008 | 0.167 | -0.302 |