Model info
Transcription factorFoxa1
ModelFOXA1_MOUSE.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length10
Quality
A
Motif rank
0
ConsensusTGTTTACWYW
Best auROC (human)0.9804400727650533
Best auROC (mouse)0.9784562985660552
Peak sets in benchmark (human)199
Peak sets in benchmark (mouse)28
Aligned words501
TF familyForkhead box (FOX) factors{3.3.1}
TF subfamilyFOXA{3.3.1.1}
MGI1347472
EntrezGene15375
UniProt IDFOXA1_MOUSE
UniProt ACP35582
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.78993
0.0005 5.79854
0.0001 8.11043
GTEx tissue expression atlas Foxa1 expression
Motifs in JASPAR
PCM
ACGT
0111.01.00.0488.0
02129.00.0371.00.0
030.00.00.0500.0
042.00.029.0469.0
050.00.0149.0351.0
06464.01.033.02.0
076.0457.00.037.0
08218.066.00.0216.0
0927.0183.046.0244.0
10241.06.022.0231.0
PWM
ACGT
01-2.311-3.903-4.41.353
020.031-4.41.08-4.4
03-4.4-4.4-4.41.377
04-3.573-4.4-1.4211.313
05-4.4-4.40.1741.025
061.303-3.903-1.298-3.573
07-2.8191.287-4.4-1.189
080.551-0.628-4.40.542
09-1.4890.377-0.9790.663
100.651-2.819-1.6810.608