Model info
Transcription factorFoxa1
ModelFOXA1_MOUSE.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length10
Quality
A
Motif rank
0
ConsensusTGTTTACWYW
Best auROC (human)0.9804400727650533
Best auROC (mouse)0.9784562985660552
Peak sets in benchmark (human)199
Peak sets in benchmark (mouse)28
Aligned words501
TF familyForkhead box (FOX) factors{3.3.1}
TF subfamilyFOXA{3.3.1.1}
MGI1347472
EntrezGene15375
UniProt IDFOXA1_MOUSE
UniProt ACP35582
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.78993
0.0005 5.79854
0.0001 8.11043
GTEx tissue expression atlas Foxa1 expression
ReMap ChIP-seq dataset list Foxa1 datasets
Motifs in JASPAR
PCM
ACGT
0111.01.00.0488.0
02129.00.0371.00.0
030.00.00.0500.0
042.00.029.0469.0
050.00.0149.0351.0
06464.01.033.02.0
076.0457.00.037.0
08218.066.00.0216.0
0927.0183.046.0244.0
10241.06.022.0231.0
PWM
ACGT
01-2.311-3.903-4.41.353
020.031-4.41.08-4.4
03-4.4-4.4-4.41.377
04-3.573-4.4-1.4211.313
05-4.4-4.40.1741.025
061.303-3.903-1.298-3.573
07-2.8191.287-4.4-1.189
080.551-0.628-4.40.542
09-1.4890.377-0.9790.663
100.651-2.819-1.6810.608