Model info
Transcription factorFoxa2
ModelFOXA2_MOUSE.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length13
Quality
A
Motif rank
0
ConsensusbnhTGTTTACWbW
Best auROC (human)0.9769680797579057
Best auROC (mouse)0.9916381297703151
Peak sets in benchmark (human)22
Peak sets in benchmark (mouse)34
Aligned words500
TF familyForkhead box (FOX) factors{3.3.1}
TF subfamilyFOXA{3.3.1.1}
MGI1347476
EntrezGene15376
UniProt IDFOXA2_MOUSE
UniProt ACP35583
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.04601
0.0005 6.04361
0.0001 8.12976
GTEx tissue expression atlas Foxa2 expression
ReMap ChIP-seq dataset list Foxa2 datasets
Motifs in JASPAR
PCM
ACGT
0155.0200.090.0155.0
0284.0179.0127.0110.0
0399.0133.057.0211.0
0423.04.01.0472.0
05152.07.0341.00.0
064.02.02.0492.0
073.01.033.0463.0
080.00.0148.0352.0
09452.01.032.015.0
102.0454.01.043.0
11218.053.01.0228.0
1248.0143.049.0260.0
13236.04.019.0241.0
PWM
ACGT
01-0.8050.465-0.3240.213
02-0.3920.3550.016-0.126
03-0.230.061-0.7710.519
04-1.64-3.126-3.9031.32
050.193-2.6940.996-4.4
06-3.126-3.573-3.5731.361
07-3.325-3.903-1.2981.3
08-4.4-4.40.1671.027
091.276-3.903-1.328-2.034
10-3.5731.281-3.903-1.044
110.551-0.841-3.9030.595
12-0.9380.133-0.9180.726
130.63-3.126-1.8180.651