Model info
Transcription factorGABPA
ModelGABPA_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length17
Quality
A
Motif rank
0
ConsensusvvvnvSCGGAAGYRvvn
Best auROC (human)0.9909127507779633
Best auROC (mouse)0.9455285363115365
Peak sets in benchmark (human)92
Peak sets in benchmark (mouse)8
Aligned words501
TF familyEts-related factors{3.5.2}
TF subfamilyEts-like factors{3.5.2.1}
HGNC4071
EntrezGene2551
UniProt IDGABPA_HUMAN
UniProt ACQ06546
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 3.00666
0.0005 5.50226
0.0001 10.475560000000002
GTEx tissue expression atlas GABPA expression
ReMap ChIP-seq dataset list GABPA datasets
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0123.027.045.05.031.027.0111.020.019.039.055.022.014.09.025.028.0
0216.033.036.02.015.024.048.015.055.055.0106.020.015.025.032.03.0
0327.026.032.016.025.047.025.040.091.070.051.010.05.021.06.08.0
0474.027.045.02.044.036.067.017.053.011.046.04.015.023.027.09.0
0522.0123.041.00.01.093.03.00.012.0126.045.02.02.028.02.00.0
069.026.01.01.017.0351.02.00.07.082.01.01.01.01.00.00.0
070.00.034.00.00.00.0460.00.00.00.04.00.00.00.02.00.0
080.00.00.00.00.00.00.00.00.00.0500.00.00.00.00.00.0
090.00.00.00.00.00.00.00.0498.02.00.00.00.00.00.00.0
10489.01.01.07.01.01.00.00.00.00.00.00.00.00.00.00.0
1162.012.0416.00.00.00.02.00.00.00.01.00.01.00.06.00.0
123.023.00.037.01.05.01.05.021.068.016.0320.00.00.00.00.0
133.02.020.00.023.05.056.012.06.03.05.03.054.046.0228.034.0
1426.025.032.03.014.019.019.04.0111.063.0120.015.09.015.022.03.0
1538.073.034.015.025.050.026.021.058.060.051.024.01.012.06.06.0
1654.019.038.011.015.038.091.051.015.024.048.030.04.027.017.018.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.302-0.1440.361-1.77-0.008-0.1441.259-0.439-0.490.2190.56-0.346-0.788-1.215-0.22-0.108
02-0.6580.0540.14-2.584-0.721-0.260.425-0.7210.560.561.213-0.439-0.721-0.220.023-2.234
03-0.144-0.1810.023-0.658-0.220.404-0.220.2441.0610.80.485-1.114-1.77-0.392-1.6-1.328
040.855-0.1440.361-2.5840.3390.140.756-0.5990.523-1.0220.383-1.975-0.721-0.302-0.144-1.215
05-0.3461.3610.269-4.4-3.1261.082-2.234-4.4-0.9381.3850.361-2.584-2.584-0.108-2.584-4.4
06-1.215-0.181-3.126-3.126-0.5992.408-2.584-4.4-1.4540.957-3.126-3.126-3.126-3.126-4.4-4.4
07-4.4-4.40.083-4.4-4.4-4.42.678-4.4-4.4-4.4-1.975-4.4-4.4-4.4-2.584-4.4
08-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.42.761-4.4-4.4-4.4-4.4-4.4
09-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.42.757-2.584-4.4-4.4-4.4-4.4-4.4-4.4
102.739-3.126-3.126-1.454-3.126-3.126-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4
110.679-0.9382.577-4.4-4.4-4.4-2.584-4.4-4.4-4.4-3.126-4.4-3.126-4.4-1.6-4.4
12-2.234-0.302-4.40.167-3.126-1.77-3.126-1.77-0.3920.771-0.6582.315-4.4-4.4-4.4-4.4
13-2.234-2.584-0.439-4.4-0.302-1.770.578-0.938-1.6-2.234-1.77-2.2340.5420.3831.9770.083
14-0.181-0.220.023-2.234-0.788-0.49-0.49-1.9751.2590.6951.336-0.721-1.215-0.721-0.346-2.234
150.1930.8410.083-0.721-0.220.465-0.181-0.3920.6130.6460.485-0.26-3.126-0.938-1.6-1.6
160.542-0.490.193-1.022-0.7210.1931.0610.485-0.721-0.260.425-0.04-1.975-0.144-0.599-0.543