Model info
Transcription factorGabpa
ModelGABPA_MOUSE.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length14
Quality
A
Motif rank
0
ConsensusvvvvSCGGAAGYRv
Best auROC (human)0.987572528760399
Best auROC (mouse)0.9517059924236799
Peak sets in benchmark (human)92
Peak sets in benchmark (mouse)8
Aligned words500
TF familyEts-related factors{3.5.2}
TF subfamilyEts-like factors{3.5.2.1}
MGI95610
EntrezGene14390
UniProt IDGABPA_MOUSE
UniProt ACQ00422
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 2.55451
0.0005 3.75041
0.0001 6.09831
GTEx tissue expression atlas Gabpa expression
ReMap ChIP-seq dataset list Gabpa datasets
Motifs in JASPAR
PCM
ACGT
0188.097.0250.065.0
02101.0109.0251.039.0
03196.0148.0119.037.0
04228.085.0169.018.0
0544.0319.0136.01.0
0670.0421.07.02.0
070.00.0500.00.0
080.00.0500.00.0
09499.00.00.01.0
10491.01.01.07.0
1172.05.0423.00.0
1237.097.026.0340.0
1374.060.0308.058.0
14144.0132.0192.032.0
PWM
ACGT
01-0.346-0.250.687-0.643
02-0.21-0.1350.691-1.138
030.4450.167-0.049-1.189
040.595-0.380.298-1.868
05-1.0220.9290.083-3.903
06-0.571.206-2.694-3.573
07-4.4-4.41.377-4.4
08-4.4-4.41.377-4.4
091.375-4.4-4.4-3.903
101.359-3.903-3.903-2.694
11-0.543-2.9611.21-4.4
12-1.189-0.25-1.5250.993
13-0.516-0.7210.894-0.754
140.140.0540.425-1.328