Model info
Transcription factorGabpa
ModelGABPA_MOUSE.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length14
Quality
A
Motif rank
0
ConsensusvvvvSCGGAAGYRv
Best auROC (human)0.987572528760399
Best auROC (mouse)0.9517059924236799
Peak sets in benchmark (human)92
Peak sets in benchmark (mouse)8
Aligned words500
TF familyEts-related factors{3.5.2}
TF subfamilyEts-like factors{3.5.2.1}
MGI95610
EntrezGene14390
UniProt IDGABPA_MOUSE
UniProt ACQ00422
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 2.55451
0.0005 3.75041
0.0001 6.09831
GTEx tissue expression atlas Gabpa expression
Motifs in JASPAR
PCM
ACGT
0188.097.0250.065.0
02101.0109.0251.039.0
03196.0148.0119.037.0
04228.085.0169.018.0
0544.0319.0136.01.0
0670.0421.07.02.0
070.00.0500.00.0
080.00.0500.00.0
09499.00.00.01.0
10491.01.01.07.0
1172.05.0423.00.0
1237.097.026.0340.0
1374.060.0308.058.0
14144.0132.0192.032.0
PWM
ACGT
01-0.346-0.250.687-0.643
02-0.21-0.1350.691-1.138
030.4450.167-0.049-1.189
040.595-0.380.298-1.868
05-1.0220.9290.083-3.903
06-0.571.206-2.694-3.573
07-4.4-4.41.377-4.4
08-4.4-4.41.377-4.4
091.375-4.4-4.4-3.903
101.359-3.903-3.903-2.694
11-0.543-2.9611.21-4.4
12-1.189-0.25-1.5250.993
13-0.516-0.7210.894-0.754
140.140.0540.425-1.328