Model info
Transcription factorGata1
ModelGATA1_MOUSE.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length19
Quality
A
Motif rank
0
ConsensusbKbnnvnndvWGATAASvv
Best auROC (human)0.9641464948838933
Best auROC (mouse)0.9511421111682287
Peak sets in benchmark (human)48
Peak sets in benchmark (mouse)122
Aligned words500
TF familyGATA-type zinc fingers{2.2.1}
TF subfamilyTwo zinc-finger GATA factors{2.2.1.1}
MGI95661
EntrezGene14460
UniProt IDGATA1_MOUSE
UniProt ACP17679
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.76601
0.0005 5.64001
0.0001 7.39141
GTEx tissue expression atlas Gata1 expression
ReMap ChIP-seq dataset list Gata1 datasets
Motifs in JASPAR
PCM
ACGT
0150.0108.095.0247.0
0231.060.0300.0109.0
0354.0138.0215.093.0
0497.0117.0185.0101.0
0598.0105.0201.096.0
0681.0139.0200.080.0
07116.0104.0184.096.0
08121.0122.0147.0110.0
09144.074.0184.098.0
1077.0229.0159.035.0
11324.024.011.0141.0
121.02.0495.02.0
13488.03.06.03.0
1427.09.020.0444.0
15462.04.07.027.0
16396.06.076.022.0
1779.097.0303.021.0
18164.0103.0208.025.0
19154.0134.0162.050.0
PWM
ACGT
01-0.898-0.144-0.2710.675
02-1.358-0.7210.868-0.135
03-0.8230.0980.537-0.291
04-0.25-0.0650.388-0.21
05-0.24-0.1720.47-0.26
06-0.4270.1050.465-0.439
07-0.074-0.1810.383-0.26
08-0.032-0.0240.16-0.126
090.14-0.5160.383-0.24
10-0.4770.60.238-1.242
110.945-1.6-2.3110.119
12-3.903-3.5731.367-3.573
131.353-3.325-2.819-3.325
14-1.489-2.484-1.771.259
151.298-3.126-2.694-1.489
161.145-2.819-0.49-1.681
17-0.452-0.250.878-1.725
180.269-0.1910.504-1.561
190.2060.0690.256-0.898