Model info
Transcription factorGCM2
ModelGCM2_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceHT-SELEX
Model releaseHOCOMOCOv10
Model length11
Quality
D
Motif rank
0
ConsensusbRTGCGGGTdn
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words352
TF familyGCM factors{7.2.1}
TF subfamilyGCMb (GCM2){7.2.1.0.2}
HGNC4198
EntrezGene9247
UniProt IDGCM2_HUMAN
UniProt ACO75603
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 1.60644
0.0005 2.85181
0.0001 5.11046
GTEx tissue expression atlas GCM2 expression
ReMap ChIP-seq dataset list GCM2 datasets
Motifs in JASPAR
PCM
ACGT
0139.7587.75114.75109.75
02268.024.036.024.0
030.00.00.0352.0
0416.01.0335.00.0
051.0349.00.02.0
060.00.0349.03.0
070.00.0352.00.0
080.750.75349.750.75
099.550.52.5289.5
10194.7523.7580.7552.75
1146.7587.7599.75117.75
PWM
ACGT
01-0.775-0.0030.2620.218
021.103-1.257-0.87-1.257
03-4.111-4.111-4.1111.374
04-1.634-3.5911.325-4.111
05-3.5911.365-4.111-3.251
06-4.111-4.1111.365-2.997
07-4.111-4.1111.374-4.111
08-3.698-3.6981.368-3.698
09-2.099-0.543-3.1161.179
100.785-1.266-0.085-0.501
11-0.618-0.0030.1230.287