Model info
Transcription factorHMBOX1
ModelHMBX1_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length9
Quality
D
Motif rank
0
ConsensusdRYTRGTbA
Best auROC (human)0.759684935225927
Best auROC (mouse)
Peak sets in benchmark (human)7
Peak sets in benchmark (mouse)
Aligned words500
TF familyPOU domain factors{3.1.10}
TF subfamilyHNF1-like factors{3.1.10.7}
HGNC26137
EntrezGene79618
UniProt IDHMBX1_HUMAN
UniProt ACQ6NT76
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.32827
0.0005 6.19995
0.0001 7.64316
GTEx tissue expression atlas HMBOX1 expression
ReMap ChIP-seq dataset list HMBOX1 datasets
Motifs in JASPAR
PCM
ACGT
01201.014.0200.085.0
02164.059.0260.017.0
038.0338.014.0140.0
044.012.07.0477.0
05330.01.0158.011.0
060.06.0493.01.0
079.252.255.25483.25
0848.25163.2554.25234.25
09405.255.2515.2574.25
PWM
ACGT
010.47-2.0960.465-0.38
020.269-0.7370.726-1.92
03-2.5840.987-2.0960.112
04-3.126-2.234-2.6941.33
050.963-3.9030.232-2.311
06-4.4-2.8191.363-3.903
07-2.461-3.505-2.9231.343
08-0.9330.264-0.8190.622
091.168-2.923-2.019-0.513