Model info
Transcription factorHmga2
ModelHMGA2_MOUSE.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length15
Quality
D
Motif rank
0
ConsensusAATAWhSSSSAATAT
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words75
TF familyHMGA factors{8.2.1}
TF subfamilyHMGA2 (HMGI-C){8.2.1.0.2}
MGI101761
EntrezGene15364
UniProt IDHMGA2_MOUSE
UniProt ACP52927
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 3.79291
0.0005 4.826459999999999
0.0001 6.966415
GTEx tissue expression atlas Hmga2 expression
Motifs in JASPAR
PCM
ACGT
0171.7521.2411.2411.241
0254.6210.00.020.855
0311.9170.00.063.559
0444.690.00.030.786
0539.7241.9860.99332.772
0612.9120.8558.93832.772
070.041.7129.7933.972
081.98624.82846.6761.986
090.037.73832.7724.966
101.98631.77940.7170.993
1171.5030.02.9790.993
1259.5860.9930.014.897
131.9860.9930.072.497
1459.5860.00.99314.897
151.491.491.4971.007
PWM
ACGT
011.295-2.151-2.151-2.151
021.027-2.915-2.9150.095
03-0.428-2.915-2.9151.176
040.83-2.915-2.9150.468
050.716-1.872-2.2640.529
06-0.3550.095-0.6890.529
07-2.9150.7630.437-1.373
08-1.8720.2610.873-1.872
09-2.9150.6660.529-1.194
10-1.8720.4990.74-2.264
111.292-2.915-1.592-2.264
121.112-2.264-2.915-0.222
13-1.872-2.264-2.9151.305
141.112-2.915-2.264-0.222
15-2.049-2.049-2.0491.285