Model info
Transcription factorHoxa13
ModelHXA13_MOUSE.H11MO.0.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length11
Quality
C
Motif rank
0
ConsensusvdTWTTATKGS
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words18
TF familyHOX-related factors {3.1.1}
TF subfamilyHOX9-13 {3.1.1.8}
MGIMGI:96173
EntrezGeneGeneID:15398
(SSTAR profile)
UniProt IDHXA13_MOUSE
UniProt ACQ62424
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.350265
0.0005 5.992145
0.0001 7.3465
GTEx tissue expression atlas Hoxa13 expression
Motifs in JASPAR
PCM
ACGT
013.1853.3028.5621.899
025.8441.0526.3123.74
030.00.03.27313.675
044.9090.02.1049.935
051.0520.00.015.896
064.4420.00.012.506
0716.9480.00.00.0
080.02.9220.014.026
091.871.0523.97410.052
100.01.05212.9742.922
111.6953.21411.5130.526
PWM
ACGT
01-0.239-0.210.628-0.64
020.281-1.0330.35-0.106
03-1.944-1.944-0.2171.068
040.127-1.944-0.5650.767
05-1.033-1.944-1.9441.211
060.041-1.944-1.9440.983
071.273-1.944-1.944-1.944
08-1.944-0.309-1.9441.092
09-0.651-1.033-0.0550.778
10-1.944-1.0331.018-0.309
11-0.722-0.2320.905-1.388