Model info
Transcription factorHoxa13
ModelHXA13_MOUSE.H11MO.0.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length11
Quality
C
Motif rank
0
ConsensusvdTWTTATKGS
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words18
TF familyHOX-related factors{3.1.1}
TF subfamilyHOX9-13{3.1.1.8}
MGI96173
EntrezGene15398
UniProt IDHXA13_MOUSE
UniProt ACQ62424
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.3435
0.0005 5.99283
0.0001 7.34716
GTEx tissue expression atlas Hoxa13 expression
ReMap ChIP-seq dataset list Hoxa13 datasets
Motifs in JASPAR
PCM
ACGT
013.1853.3028.5621.899
025.8441.0526.3123.74
030.00.03.27313.675
044.9090.02.1049.935
051.0520.00.015.896
064.4420.00.012.506
0716.9480.00.00.0
080.02.9220.014.026
091.871.0523.97410.052
100.01.05212.9742.922
111.6953.21411.5130.526
PWM
ACGT
01-0.239-0.210.628-0.64
020.281-1.0330.35-0.106
03-1.944-1.944-0.2171.068
040.127-1.944-0.5650.767
05-1.033-1.944-1.9441.211
060.041-1.944-1.9440.983
071.273-1.944-1.944-1.944
08-1.944-0.309-1.9441.092
09-0.651-1.033-0.0550.778
10-1.944-1.0331.018-0.309
11-0.722-0.2320.905-1.388