Model info
Transcription factorHOXA2
ModelHXA2_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceHT-SELEX
Model releaseHOCOMOCOv10
Model length11
Quality
D
Motif rank
0
ConsensusnvTMATTAdnd
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words14435
TF familyHOX-related factors{3.1.1}
TF subfamilyHOX2{3.1.1.2}
HGNC5103
EntrezGene3199
UniProt IDHXA2_HUMAN
UniProt ACO43364
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.42581
0.0005 6.33245
0.0001 7.88107
GTEx tissue expression atlas HOXA2 expression
ReMap ChIP-seq dataset list HOXA2 datasets
Motifs in JASPAR
PCM
ACGT
013453.1722571.4154313.4743302.164
022344.6972166.547708.5691420.42
03533.0981473.738433.82311199.566
0410452.1132322.288684.985180.839
0513438.56560.608141.0530.0
0680.8110.041.04513518.369
070.6491.68984.55813463.339
0812945.073228.122182.505284.525
094911.422727.9016232.6311768.271
101871.4734471.7383183.6364113.379
114175.3351646.6685088.4932729.729
PWM
ACGT
010.013-0.2820.235-0.032
02-0.374-0.4530.815-0.875
03-1.852-0.838-2.0571.189
041.12-0.384-1.602-2.924
051.371-3.992-3.169-7.268
06-3.714-7.268-4.3641.377
07-7.03-3.591-3.671.373
081.333-2.695-2.915-2.476
090.365-1.5420.603-0.656
10-0.5990.271-0.0690.187
110.202-0.7270.4-0.222