Model info
Transcription factorHoxc6
ModelHXC6_MOUSE.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length15
Quality
D
Motif rank
0
ConsensusWTGATTTATTWCTTT
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words7
TF familyHOX-related factors{3.1.1}
TF subfamilyHOX6-7{3.1.1.6}
MGI96197
EntrezGene15425
UniProt IDHXC6_MOUSE
UniProt ACP10629
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.2008
0.0005 6.014645
0.0001 8.139485
GTEx tissue expression atlas Hoxc6 expression
Motifs in JASPAR
PCM
ACGT
014.6380.1461.0211.196
020.00.00.07.0
030.00.07.00.0
047.00.00.00.0
050.00.00.07.0
060.00.00.07.0
070.00.01.055.95
087.00.00.00.0
090.00.00.07.0
100.00.01.055.95
115.0750.5830.2921.05
120.05.3671.050.583
131.050.00.05.95
140.00.00.07.0
150.1460.1461.1965.513
PWM
ACGT
010.829-1.263-0.395-0.285
02-1.525-1.525-1.5251.208
03-1.525-1.5251.208-1.525
041.208-1.525-1.525-1.525
05-1.525-1.525-1.5251.208
06-1.525-1.525-1.5251.208
07-1.525-1.525-0.3751.057
081.208-1.525-1.525-1.525
09-1.525-1.525-1.5251.208
10-1.525-1.525-0.3751.057
110.911-0.737-1.056-0.375
12-1.5250.962-0.375-0.737
13-0.375-1.525-1.5251.057
14-1.525-1.525-1.5251.208
15-1.263-1.263-0.2850.987