Model info
| Transcription factor | Hoxd10 | ||||||||
| Model | HXD10_MOUSE.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | Integrative | ||||||||
| Model release | HOCOMOCOv9 | ||||||||
| Model length | 10 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | TGnTYTWRTK | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 7 | ||||||||
| TF family | HOX-related factors {3.1.1} | ||||||||
| TF subfamily | HOX9-13 {3.1.1.8} | ||||||||
| MGI | MGI:96202 | ||||||||
| EntrezGene | GeneID:15430 (SSTAR profile) | ||||||||
| UniProt ID | HXD10_MOUSE | ||||||||
| UniProt AC | P28359 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Hoxd10 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 1.075 | 0.215 | 0.215 | 5.495 |
| 02 | 1.72 | 0.0 | 5.28 | 0.0 |
| 03 | 0.86 | 3.559 | 0.86 | 1.72 |
| 04 | 0.86 | 0.0 | 0.0 | 6.14 |
| 05 | 0.86 | 1.839 | 0.0 | 4.301 |
| 06 | 0.0 | 0.0 | 0.0 | 7.0 |
| 07 | 4.419 | 0.0 | 0.86 | 1.72 |
| 08 | 4.301 | 0.0 | 1.839 | 0.86 |
| 09 | 0.0 | 0.0 | 0.0 | 7.0 |
| 10 | 0.215 | 0.215 | 1.936 | 4.634 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.359 | -1.159 | -1.159 | 0.984 |
| 02 | -0.013 | -1.525 | 0.947 | -1.525 |
| 03 | -0.507 | 0.593 | -0.507 | -0.013 |
| 04 | -0.507 | -1.525 | -1.525 | 1.086 |
| 05 | -0.507 | 0.039 | -1.525 | 0.761 |
| 06 | -1.525 | -1.525 | -1.525 | 1.208 |
| 07 | 0.786 | -1.525 | -0.507 | -0.013 |
| 08 | 0.761 | -1.525 | 0.039 | -0.507 |
| 09 | -1.525 | -1.525 | -1.525 | 1.208 |
| 10 | -1.159 | -1.159 | 0.08 | 0.828 |