Model info
Transcription factorHOXD8
ModelHXD8_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceHT-SELEX
Model releaseHOCOMOCOv10
Model length11
Quality
D
Motif rank
0
ConsensushhWTWTRCvnn
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words278
TF familyHOX-related factors{3.1.1}
TF subfamilyHOX8{3.1.1.7}
HGNC5139
EntrezGene3234
UniProt IDHXD8_HUMAN
UniProt ACP13378
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.89755
0.0005 6.51422
0.0001 7.597
GTEx tissue expression atlas HOXD8 expression
ReMap ChIP-seq dataset list HOXD8 datasets
Motifs in JASPAR
PCM
ACGT
0182.043.028.0125.0
02154.554.521.547.5
03202.08.07.061.0
040.755.756.75264.75
0595.00.06.0177.0
0686.01.00.0191.0
0735.03.0213.027.0
083.25268.253.253.25
09123.2553.2551.2550.25
1054.060.053.0111.0
1195.556.554.571.5
PWM
ACGT
010.162-0.468-0.880.578
020.788-0.238-1.13-0.371
031.054-2.02-2.132-0.128
04-3.493-2.293-2.1631.323
050.307-3.92-2.2590.923
060.209-3.383-3.920.998
07-0.667-2.7781.107-0.915
08-2.7231.336-2.723-2.723
090.564-0.26-0.298-0.317
10-0.247-0.144-0.2650.461
110.312-0.203-0.2380.028