Model info
Transcription factorIRX3
ModelIRX3_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceHT-SELEX
Model releaseHOCOMOCOv10
Model length11
Quality
D
Motif rank
0
ConsensushndYWTGTWhd
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words383
TF familyTALE-type homeo domain factors{3.1.4}
TF subfamilyIRX (Iroquois){3.1.4.1}
HGNC14360
EntrezGene79191
UniProt IDIRX3_HUMAN
UniProt ACP78415
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.77001
0.0005 6.46502
0.0001 7.69906
GTEx tissue expression atlas IRX3 expression
ReMap ChIP-seq dataset list IRX3 datasets
Motifs in JASPAR
PCM
ACGT
01143.038.035.0165.0
0281.7579.7576.75142.75
03151.7528.7535.75164.75
0419.25255.2515.2591.25
05252.02.059.068.0
060.02.00.0379.0
075.00.0372.04.0
080.00.00.0381.0
09178.2518.757.75176.25
10155.578.571.575.5
1189.554.557.5179.5
PWM
ACGT
010.401-0.896-0.9750.543
02-0.15-0.175-0.2120.399
030.46-1.163-0.9550.541
04-1.540.976-1.754-0.042
050.963-3.323-0.47-0.331
06-4.176-3.323-4.1761.369
07-2.702-4.1761.351-2.87
08-4.176-4.176-4.1761.375
090.62-1.565-2.3490.608
100.484-0.19-0.282-0.228
11-0.061-0.547-0.4950.626