Model info
Transcription factorLhx6
ModelLHX6_MOUSE.H11MO.0.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length9
Quality
C
Motif rank
0
ConsensusnYTGATTRv
Best auROC (human)0.5173910635880673
Best auROC (mouse)0.9457816742153262
Peak sets in benchmark (human)1
Peak sets in benchmark (mouse)2
Aligned words241
TF familyHD-LIM factors{3.1.5}
TF subfamilyLhx-6-like factors{3.1.5.5}
MGI1306803
EntrezGene16874
UniProt IDLHX6_MOUSE
UniProt ACQ9R1R0
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.4412
0.0005 6.27288
0.0001 8.07472
GTEx tissue expression atlas Lhx6 expression
Motifs in JASPAR
PCM
ACGT
0148.067.086.040.0
0218.0144.016.063.0
032.01.00.0238.0
0422.011.0206.02.0
05239.00.01.01.0
066.01.00.0234.0
070.00.07.0234.0
08135.00.098.08.0
0951.0102.082.06.0
PWM
ACGT
01-0.2220.1040.349-0.398
02-1.1570.858-1.2660.044
03-2.906-3.258-3.8051.357
04-0.97-1.6061.214-2.906
051.361-3.805-3.258-3.258
06-2.123-3.258-3.8051.34
07-3.805-3.805-1.9961.34
080.794-3.8050.478-1.883
09-0.1630.5170.302-2.123