Model info
Transcription factorLhx6
ModelLHX6_MOUSE.H11MO.0.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length9
Quality
C
Motif rank
0
ConsensusnYTGATTRv
Best auROC (human)0.5173910635880673
Best auROC (mouse)0.9457816742153262
Peak sets in benchmark (human)1
Peak sets in benchmark (mouse)2
Aligned words241
TF familyHD-LIM factors{3.1.5}
TF subfamilyLhx-6-like factors{3.1.5.5}
MGI1306803
EntrezGene16874
UniProt IDLHX6_MOUSE
UniProt ACQ9R1R0
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.4412
0.0005 6.27288
0.0001 8.07472
GTEx tissue expression atlas Lhx6 expression
ReMap ChIP-seq dataset list Lhx6 datasets
Motifs in JASPAR
PCM
ACGT
0148.067.086.040.0
0218.0144.016.063.0
032.01.00.0238.0
0422.011.0206.02.0
05239.00.01.01.0
066.01.00.0234.0
070.00.07.0234.0
08135.00.098.08.0
0951.0102.082.06.0
PWM
ACGT
01-0.2220.1040.349-0.398
02-1.1570.858-1.2660.044
03-2.906-3.258-3.8051.357
04-0.97-1.6061.214-2.906
051.361-3.805-3.258-3.258
06-2.123-3.258-3.8051.34
07-3.805-3.805-1.9961.34
080.794-3.8050.478-1.883
09-0.1630.5170.302-2.123