Model info
Transcription factorMSX1
ModelMSX1_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceHT-SELEX
Model releaseHOCOMOCOv10
Model length18
Quality
D
Motif rank
0
ConsensusWWATTRbdhbhTAATTRb
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words34415
TF familyNK-related factors{3.1.2}
TF subfamilyMSX{3.1.2.11}
HGNC7391
EntrezGene4487
UniProt IDMSX1_HUMAN
UniProt ACP28360
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 3.99611
0.0005 5.28041
0.0001 7.88171
GTEx tissue expression atlas MSX1 expression
ReMap ChIP-seq dataset list MSX1 datasets
Motifs in JASPAR
PCM
ACGT
014189.0243433.8672448.26220664.154
0223141.9281431.3411633.064528.978
0327824.861367.413455.1172087.916
043876.729343.302652.04925863.227
052126.3241355.0771374.89825879.008
067433.689450.74917905.2374945.633
074412.6617487.28113932.6554902.71
087383.9484311.6495321.1713718.54
098123.1985711.4964030.37912870.234
104820.3295236.8317553.20913124.939
114074.8215679.6443485.72817495.114
12108.558300.1320.22230306.397
1329377.22826.541785.818545.72
1430728.3561.2645.0550.632
15118.66203.703328.32730084.617
16754.024920.0881265.85127795.345
179204.063821.79819610.3641099.082
183773.70610650.49412160.9654150.142
PWM
ACGT
01-0.606-0.805-1.1430.989
021.102-1.679-1.547-0.528
031.287-3.034-2.821-1.302
04-0.684-3.101-2.4631.213
05-1.284-1.734-1.7191.214
06-0.033-2.8310.846-0.44
07-0.554-0.0260.595-0.449
08-0.04-0.578-0.3670.579
090.056-0.297-0.6450.516
10-0.466-0.383-0.0170.535
11-0.634-0.302-0.790.823
12-4.236-3.234-5.821.372
131.341-5.576-2.277-2.64
141.386-7.6-6.914-7.779
15-4.149-3.618-3.1451.365
16-2.318-2.12-1.8021.286
170.18-2.2330.937-1.943
18-0.7110.3260.459-0.616