Model info
| Transcription factor | MSX1 (GeneCards) | ||||||||
| Model | MSX1_HUMAN.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | HT-SELEX | ||||||||
| Model release | HOCOMOCOv10 | ||||||||
| Model length | 18 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | WWATTRbdhbhTAATTRb | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 34415 | ||||||||
| TF family | NK-related factors {3.1.2} | ||||||||
| TF subfamily | MSX {3.1.2.11} | ||||||||
| HGNC | HGNC:7391 | ||||||||
| EntrezGene | GeneID:4487 (SSTAR profile) | ||||||||
| UniProt ID | MSX1_HUMAN | ||||||||
| UniProt AC | P28360 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | MSX1 expression | ||||||||
| ReMap ChIP-seq dataset list | MSX1 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 4189.024 | 3433.867 | 2448.262 | 20664.154 |
| 02 | 23141.928 | 1431.341 | 1633.06 | 4528.978 |
| 03 | 27824.861 | 367.413 | 455.117 | 2087.916 |
| 04 | 3876.729 | 343.302 | 652.049 | 25863.227 |
| 05 | 2126.324 | 1355.077 | 1374.898 | 25879.008 |
| 06 | 7433.689 | 450.749 | 17905.237 | 4945.633 |
| 07 | 4412.661 | 7487.281 | 13932.655 | 4902.71 |
| 08 | 7383.948 | 4311.649 | 5321.17 | 13718.54 |
| 09 | 8123.198 | 5711.496 | 4030.379 | 12870.234 |
| 10 | 4820.329 | 5236.831 | 7553.209 | 13124.939 |
| 11 | 4074.821 | 5679.644 | 3485.728 | 17495.114 |
| 12 | 108.558 | 300.13 | 20.222 | 30306.397 |
| 13 | 29377.228 | 26.541 | 785.818 | 545.72 |
| 14 | 30728.356 | 1.264 | 5.055 | 0.632 |
| 15 | 118.66 | 203.703 | 328.327 | 30084.617 |
| 16 | 754.024 | 920.088 | 1265.851 | 27795.345 |
| 17 | 9204.063 | 821.798 | 19610.364 | 1099.082 |
| 18 | 3773.706 | 10650.494 | 12160.965 | 4150.142 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.606 | -0.805 | -1.143 | 0.989 |
| 02 | 1.102 | -1.679 | -1.547 | -0.528 |
| 03 | 1.287 | -3.034 | -2.821 | -1.302 |
| 04 | -0.684 | -3.101 | -2.463 | 1.213 |
| 05 | -1.284 | -1.734 | -1.719 | 1.214 |
| 06 | -0.033 | -2.831 | 0.846 | -0.44 |
| 07 | -0.554 | -0.026 | 0.595 | -0.449 |
| 08 | -0.04 | -0.578 | -0.367 | 0.579 |
| 09 | 0.056 | -0.297 | -0.645 | 0.516 |
| 10 | -0.466 | -0.383 | -0.017 | 0.535 |
| 11 | -0.634 | -0.302 | -0.79 | 0.823 |
| 12 | -4.236 | -3.234 | -5.82 | 1.372 |
| 13 | 1.341 | -5.576 | -2.277 | -2.64 |
| 14 | 1.386 | -7.6 | -6.914 | -7.779 |
| 15 | -4.149 | -3.618 | -3.145 | 1.365 |
| 16 | -2.318 | -2.12 | -1.802 | 1.286 |
| 17 | 0.18 | -2.233 | 0.937 | -1.943 |
| 18 | -0.711 | 0.326 | 0.459 | -0.616 |