Model info
Transcription factorMYOD1
ModelMYOD1_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length15
Quality
A
Motif rank
0
ConsensusvCAGCTGYYnYbbbh
Best auROC (human)0.9902476239040008
Best auROC (mouse)0.9915177515453307
Peak sets in benchmark (human)9
Peak sets in benchmark (mouse)63
Aligned words500
TF familyMyoD / ASC-related factors{1.2.2}
TF subfamilyMyogenic transcription factors{1.2.2.1}
HGNC7611
EntrezGene4654
UniProt IDMYOD1_HUMAN
UniProt ACP15172
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 3.28711
0.0005 4.47831
0.0001 7.10401
GTEx tissue expression atlas MYOD1 expression
ReMap ChIP-seq dataset list MYOD1 datasets
Motifs in JASPAR
PCM
ACGT
01110.0119.0204.067.0
023.0496.01.00.0
03497.00.00.03.0
044.0114.0375.07.0
055.0490.00.05.0
061.02.00.0497.0
070.02.0497.01.0
080.0196.019.0285.0
096.0210.030.0254.0
1083.0167.0146.0104.0
1133.0287.054.0126.0
1272.0117.085.0226.0
1365.080.0248.0107.0
1424.0198.0111.0167.0
1577.0257.066.0100.0
PWM
ACGT
01-0.126-0.0490.485-0.613
02-3.3251.369-3.903-4.4
031.371-4.4-4.4-3.325
04-3.126-0.0911.09-2.694
05-2.9611.357-4.4-2.961
06-3.903-3.573-4.41.371
07-4.4-3.5731.371-3.903
08-4.40.445-1.8180.817
09-2.8190.514-1.3890.703
10-0.4030.2870.154-0.181
11-1.2980.824-0.8230.008
12-0.543-0.065-0.380.587
13-0.643-0.4390.679-0.153
14-1.60.455-0.1170.287
15-0.4770.714-0.628-0.22