Model info
Transcription factorMYOD1
ModelMYOD1_HUMAN.H11MO.1.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length11
Quality
A
Motif rank
1
ConsensusbnbCAGCTGTY
Best auROC (human)0.9843925509161013
Best auROC (mouse)0.9882889511892636
Peak sets in benchmark (human)9
Peak sets in benchmark (mouse)63
Aligned words500
TF familyMyoD / ASC-related factors{1.2.2}
TF subfamilyMyogenic transcription factors{1.2.2.1}
HGNC7611
EntrezGene4654
UniProt IDMYOD1_HUMAN
UniProt ACP15172
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 3.66446
0.0005 4.74251
0.0001 7.36716
GTEx tissue expression atlas MYOD1 expression
ReMap ChIP-seq dataset list MYOD1 datasets
Motifs in JASPAR
PCM
ACGT
0146.0254.096.0104.0
02137.0116.075.0172.0
0344.0105.0293.058.0
041.0491.06.02.0
05488.03.01.08.0
064.068.0415.013.0
074.0492.03.01.0
080.00.00.0500.0
090.05.0494.01.0
101.0141.06.0352.0
110.0248.042.0210.0
PWM
ACGT
01-0.9790.703-0.26-0.181
020.091-0.074-0.5030.316
03-1.022-0.1720.845-0.754
04-3.9031.359-2.819-3.573
051.353-3.325-3.903-2.584
06-3.126-0.5991.191-2.163
07-3.1261.361-3.325-3.903
08-4.4-4.4-4.41.377
09-4.4-2.9611.365-3.903
10-3.9030.119-2.8191.027
11-4.40.679-1.0670.514