Model info
Transcription factorMyod1
ModelMYOD1_MOUSE.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length15
Quality
A
Motif rank
0
ConsensusvCASCTGYYnYhvbb
Best auROC (human)0.985006035820929
Best auROC (mouse)0.9935889443614921
Peak sets in benchmark (human)9
Peak sets in benchmark (mouse)63
Aligned words501
TF familyMyoD / ASC-related factors{1.2.2}
TF subfamilyMyogenic transcription factors{1.2.2.1}
MGI97275
EntrezGene17927
UniProt IDMYOD1_MOUSE
UniProt ACP10085
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 3.35141
0.0005 4.58031
0.0001 7.40611
GTEx tissue expression atlas Myod1 expression
ReMap ChIP-seq dataset list Myod1 datasets
Motifs in JASPAR
PCM
ACGT
01118.0119.0206.057.0
021.0499.00.00.0
03499.01.00.00.0
042.0150.0331.017.0
054.0489.04.03.0
061.00.00.0499.0
070.00.0500.00.0
081.0145.025.0329.0
093.0224.034.0239.0
1085.0183.0118.0114.0
1138.0300.050.0112.0
1257.0150.048.0245.0
1390.0111.0212.087.0
1458.0165.087.0190.0
1566.0258.077.099.0
PWM
ACGT
01-0.057-0.0490.495-0.771
02-3.9031.375-4.4-4.4
031.375-3.903-4.4-4.4
04-3.5730.180.966-1.92
05-3.1261.355-3.126-3.325
06-3.903-4.4-4.41.375
07-4.4-4.41.377-4.4
08-3.9030.147-1.5610.96
09-3.3250.578-1.270.642
10-0.380.377-0.057-0.091
11-1.1630.868-0.898-0.108
12-0.7710.18-0.9380.667
13-0.324-0.1170.523-0.357
14-0.7540.275-0.3570.415
15-0.6280.718-0.477-0.23