Model info
Transcription factorMyod1
ModelMYOD1_MOUSE.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length15
Quality
A
Motif rank
0
ConsensusvCASCTGYYnYhvbb
Best auROC (human)0.985006035820929
Best auROC (mouse)0.9935889443614921
Peak sets in benchmark (human)9
Peak sets in benchmark (mouse)63
Aligned words501
TF familyMyoD / ASC-related factors{1.2.2}
TF subfamilyMyogenic transcription factors{1.2.2.1}
MGI97275
EntrezGene17927
UniProt IDMYOD1_MOUSE
UniProt ACP10085
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 3.35141
0.0005 4.58031
0.0001 7.40611
GTEx tissue expression atlas Myod1 expression
Motifs in JASPAR
PCM
ACGT
01118.0119.0206.057.0
021.0499.00.00.0
03499.01.00.00.0
042.0150.0331.017.0
054.0489.04.03.0
061.00.00.0499.0
070.00.0500.00.0
081.0145.025.0329.0
093.0224.034.0239.0
1085.0183.0118.0114.0
1138.0300.050.0112.0
1257.0150.048.0245.0
1390.0111.0212.087.0
1458.0165.087.0190.0
1566.0258.077.099.0
PWM
ACGT
01-0.057-0.0490.495-0.771
02-3.9031.375-4.4-4.4
031.375-3.903-4.4-4.4
04-3.5730.180.966-1.92
05-3.1261.355-3.126-3.325
06-3.903-4.4-4.41.375
07-4.4-4.41.377-4.4
08-3.9030.147-1.5610.96
09-3.3250.578-1.270.642
10-0.380.377-0.057-0.091
11-1.1630.868-0.898-0.108
12-0.7710.18-0.9380.667
13-0.324-0.1170.523-0.357
14-0.7540.275-0.3570.415
15-0.6280.718-0.477-0.23