Model info
Transcription factorNANOG
ModelNANOG_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length19
Quality
A
Motif rank
0
ConsensusnbbYWTTSWnWTKYWRWbn
Best auROC (human)0.9389999494802189
Best auROC (mouse)0.942652909486798
Peak sets in benchmark (human)15
Peak sets in benchmark (mouse)38
Aligned words497
TF familyNK-related factors{3.1.2}
TF subfamilyNANOG{3.1.2.12}
HGNC20857
EntrezGene79923
UniProt IDNANOG_HUMAN
UniProt ACQ9H9S0
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 11.50901
0.0005 13.16511
0.0001 16.598660000000002
GTEx tissue expression atlas NANOG expression
ReMap ChIP-seq dataset list NANOG datasets
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0112.019.052.023.016.028.013.022.020.032.058.040.02.044.052.064.0
022.026.011.011.014.065.05.039.011.0100.029.035.07.068.027.047.0
032.022.02.08.027.0148.01.083.04.043.06.019.011.092.021.08.0
0422.03.01.018.0103.012.06.0184.017.01.00.012.025.08.05.080.0
050.06.07.0154.00.01.05.018.00.05.01.06.01.017.012.0264.0
061.00.00.00.05.00.01.023.02.01.00.022.020.00.06.0416.0
073.08.015.02.00.00.01.00.01.00.04.02.047.0126.0270.018.0
0822.02.00.027.081.04.01.048.067.02.012.0209.09.02.03.08.0
0954.020.048.057.02.00.01.07.06.04.02.04.034.073.064.0121.0
1074.02.013.07.072.07.01.017.069.010.013.023.0110.031.017.031.0
1121.09.017.0278.07.05.01.037.03.02.00.039.04.06.010.058.0
125.01.022.07.04.04.08.06.05.01.014.08.03.010.0315.084.0
131.013.02.01.01.09.01.05.06.0205.056.092.04.058.06.037.0
143.02.00.07.0161.019.05.0100.037.08.010.010.087.03.011.034.0
15170.019.078.021.013.01.09.09.010.04.04.08.098.06.033.014.0
16219.015.019.038.017.03.02.08.088.019.013.04.019.012.08.013.0
1752.040.057.0194.06.015.03.025.06.012.03.021.02.07.024.030.0
1817.05.022.022.029.022.03.020.09.025.017.036.049.032.0113.076.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.932-0.4840.51-0.296-0.652-0.102-0.854-0.34-0.4330.0290.6190.25-2.5780.3450.510.717
02-2.578-0.176-1.016-1.016-0.7820.732-1.7640.225-1.0161.161-0.0680.118-1.4490.777-0.1380.41
03-2.578-0.34-2.578-1.322-0.1381.551-3.1210.975-1.970.322-1.594-0.484-1.0161.078-0.386-1.322
04-0.34-2.228-3.121-0.5371.19-0.932-1.5941.769-0.593-3.121-4.395-0.932-0.214-1.322-1.7640.938
05-4.395-1.594-1.4491.591-4.395-3.121-1.764-0.537-4.395-1.764-3.121-1.594-3.121-0.593-0.9322.129
06-3.121-4.395-4.395-4.395-1.764-4.395-3.121-0.296-2.578-3.121-4.395-0.34-0.433-4.395-1.5942.583
07-2.228-1.322-0.715-2.578-4.395-4.395-3.121-4.395-3.121-4.395-1.97-2.5780.411.3912.151-0.537
08-0.34-2.578-4.395-0.1380.951-1.97-3.1210.4310.762-2.578-0.9321.896-1.209-2.578-2.228-1.322
090.548-0.4330.4310.601-2.578-4.395-3.121-1.449-1.594-1.97-2.578-1.970.0890.8470.7171.351
100.861-2.578-0.854-1.4490.834-1.449-3.121-0.5930.791-1.108-0.854-0.2961.256-0.002-0.593-0.002
11-0.386-1.209-0.5932.181-1.449-1.764-3.1210.173-2.228-2.578-4.3950.225-1.97-1.594-1.1080.619
12-1.764-3.121-0.34-1.449-1.97-1.97-1.322-1.594-1.764-3.121-0.782-1.322-2.228-1.1082.3050.987
13-3.121-0.854-2.578-3.121-3.121-1.209-3.121-1.764-1.5941.8760.5841.078-1.970.619-1.5940.173
14-2.228-2.578-4.395-1.4491.635-0.484-1.7641.1610.173-1.322-1.108-1.1081.022-2.228-1.0160.089
151.69-0.4840.913-0.386-0.854-3.121-1.209-1.209-1.108-1.97-1.97-1.3221.141-1.5940.06-0.782
161.942-0.715-0.4840.199-0.593-2.228-2.578-1.3221.033-0.484-0.854-1.97-0.484-0.932-1.322-0.854
170.510.250.6011.821-1.594-0.715-2.228-0.214-1.594-0.932-2.228-0.386-2.578-1.449-0.254-0.034
18-0.593-1.764-0.34-0.34-0.068-0.34-2.228-0.433-1.209-0.214-0.5930.1460.4510.0291.2820.887