Model info
Transcription factorNANOG
ModelNANOG_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length17
Quality
A
Motif rank
0
ConsensusnbhWTTSWnATGYWRWb
Best auROC (human)0.9201389191849159
Best auROC (mouse)0.9282761509156662
Peak sets in benchmark (human)15
Peak sets in benchmark (mouse)38
Aligned words499
TF familyNK-related factors{3.1.2}
TF subfamilyNANOG{3.1.2.12}
HGNC20857
EntrezGene79923
UniProt IDNANOG_HUMAN
UniProt ACQ9H9S0
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.73801
0.0005 6.62011
0.0001 8.42881
GTEx tissue expression atlas NANOG expression
ReMap ChIP-seq dataset list NANOG datasets
Motifs in JASPAR
PCM
ACGT
0164.0129.0140.0166.0
0222.0243.089.0145.0
0344.0255.035.0165.0
04153.022.030.0294.0
056.030.021.0442.0
0634.04.019.0442.0
0755.0124.0294.026.0
08188.021.018.0272.0
09115.0130.096.0158.0
10403.017.020.059.0
1134.07.015.0443.0
1213.09.0405.072.0
1314.0317.058.0110.0
14340.016.08.0135.0
15331.025.0120.023.0
16402.024.034.039.0
1770.075.0100.0254.0
PWM
ACGT
01-0.6560.0330.1140.283
02-1.6790.661-0.3330.149
03-1.020.709-1.240.277
040.202-1.679-1.3870.85
05-2.817-1.387-1.7231.256
06-1.268-3.124-1.8161.256
07-0.804-0.0060.85-1.523
080.406-1.723-1.8660.773
09-0.080.041-0.2580.234
101.164-1.918-1.768-0.735
11-1.268-2.692-2.0321.258
12-2.161-2.4821.169-0.541
13-2.0940.925-0.752-0.124
140.995-1.973-2.5820.078
150.968-1.56-0.038-1.638
161.162-1.598-1.268-1.136
17-0.568-0.501-0.2180.705