Model info
Transcription factorNeurod2
ModelNDF2_MOUSE.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length10
Quality
A
Motif rank
0
ConsensusRRCAGATGGb
Best auROC (human)0.5427951857109184
Best auROC (mouse)0.9606410205876408
Peak sets in benchmark (human)2
Peak sets in benchmark (mouse)21
Aligned words503
TF familyTal-related factors{1.2.3}
TF subfamilyNeurogenin / Atonal-like factors{1.2.3.4}
MGI107755
EntrezGene18013
UniProt IDNDF2_MOUSE
UniProt ACQ62414
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.48931
0.0005 5.57942
0.0001 7.75175
GTEx tissue expression atlas Neurod2 expression
Motifs in JASPAR
PCM
ACGT
01245.041.0182.032.0
02211.097.0190.02.0
031.0499.00.00.0
04500.00.00.00.0
051.03.0464.032.0
06375.0112.012.01.0
0752.01.03.0444.0
081.00.0479.020.0
092.087.0394.017.0
1050.0196.081.0173.0
PWM
ACGT
010.667-1.090.372-1.328
020.519-0.250.415-3.573
03-3.9031.375-4.4-4.4
041.377-4.4-4.4-4.4
05-3.903-3.3251.303-1.328
061.09-0.108-2.234-3.903
07-0.86-3.903-3.3251.259
08-3.903-4.41.334-1.77
09-3.573-0.3571.14-1.92
10-0.8980.445-0.4270.322