Model info
Transcription factorNeurod2
ModelNDF2_MOUSE.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length10
Quality
A
Motif rank
0
ConsensusRRCAGATGGb
Best auROC (human)0.5427951857109184
Best auROC (mouse)0.9606410205876408
Peak sets in benchmark (human)2
Peak sets in benchmark (mouse)21
Aligned words503
TF familyTal-related factors{1.2.3}
TF subfamilyNeurogenin / Atonal-like factors{1.2.3.4}
MGI107755
EntrezGene18013
UniProt IDNDF2_MOUSE
UniProt ACQ62414
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.47922
0.0005 5.58397
0.0001 7.75688
GTEx tissue expression atlas Neurod2 expression
ReMap ChIP-seq dataset list Neurod2 datasets
Motifs in JASPAR
PCM
ACGT
01245.041.0182.032.0
02211.097.0190.02.0
031.0499.00.00.0
04500.00.00.00.0
051.03.0464.032.0
06375.0112.012.01.0
0752.01.03.0444.0
081.00.0479.020.0
092.087.0394.017.0
1050.0196.081.0173.0
PWM
ACGT
010.667-1.090.372-1.328
020.519-0.250.415-3.573
03-3.9031.375-4.4-4.4
041.377-4.4-4.4-4.4
05-3.903-3.3251.303-1.328
061.09-0.108-2.234-3.903
07-0.86-3.903-3.3251.259
08-3.903-4.41.334-1.77
09-3.573-0.3571.14-1.92
10-0.8980.445-0.4270.322