Model info
Transcription factorNfic
ModelNFIC_MOUSE.H11MO.1.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length15
Quality
A
Motif rank
1
ConsensusbYTGGCWbnnnbhYh
Best auROC (human)0.9582941081591088
Best auROC (mouse)0.8074803560516405
Peak sets in benchmark (human)18
Peak sets in benchmark (mouse)1
Aligned words410
TF familyNuclear factor 1{7.1.2}
TF subfamilyNF-1C{7.1.2.0.3}
MGI109591
EntrezGene18029
UniProt IDNFIC_MOUSE
UniProt ACP70255
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.37301
0.0005 6.05391
0.0001 7.38791
GTEx tissue expression atlas Nfic expression
ReMap ChIP-seq dataset list Nfic datasets
Motifs in JASPAR
PCM
ACGT
0138.0195.078.099.0
029.0228.02.0171.0
0320.01.09.0380.0
044.01.0385.020.0
0530.041.0334.05.0
0659.0333.018.00.0
07201.074.06.0129.0
0856.0142.0130.082.0
09106.0132.080.092.0
1090.0134.0100.086.0
11102.083.089.0136.0
1242.078.0178.0112.0
1354.0233.041.082.0
1447.0276.038.049.0
15185.0119.023.083.0
PWM
ACGT
01-0.9680.636-0.269-0.034
02-2.2930.791-3.3910.506
03-1.576-3.727-2.2931.3
04-2.939-3.7271.313-1.576
05-1.194-0.8951.171-2.772
06-0.5421.168-1.674-4.236
070.666-0.32-2.6290.227
08-0.5930.3220.235-0.22
090.0330.25-0.244-0.106
10-0.1280.265-0.024-0.173
11-0.005-0.208-0.1390.279
12-0.872-0.2690.5460.087
13-0.6280.813-0.895-0.22
14-0.7630.981-0.968-0.722
150.5840.147-1.446-0.208