Model info
Transcription factorNfic
ModelNFIC_MOUSE.H11MO.1.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length15
Quality
A
Motif rank
1
ConsensusbYTGGCWbnnnbhYh
Best auROC (human)0.9582941081591088
Best auROC (mouse)0.8074803560516405
Peak sets in benchmark (human)18
Peak sets in benchmark (mouse)1
Aligned words410
TF familyNuclear factor 1{7.1.2}
TF subfamilyNF-1C{7.1.2.0.3}
MGI109591
EntrezGene18029
UniProt IDNFIC_MOUSE
UniProt ACP70255
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.37696
0.0005 6.05156
0.0001 7.38806
GTEx tissue expression atlas Nfic expression
Motifs in JASPAR
PCM
ACGT
0138.0195.078.099.0
029.0228.02.0171.0
0320.01.09.0380.0
044.01.0385.020.0
0530.041.0334.05.0
0659.0333.018.00.0
07201.074.06.0129.0
0856.0142.0130.082.0
09106.0132.080.092.0
1090.0134.0100.086.0
11102.083.089.0136.0
1242.078.0178.0112.0
1354.0233.041.082.0
1447.0276.038.049.0
15185.0119.023.083.0
PWM
ACGT
01-0.9680.636-0.269-0.034
02-2.2930.791-3.3910.506
03-1.576-3.727-2.2931.3
04-2.939-3.7271.313-1.576
05-1.194-0.8951.171-2.772
06-0.5421.168-1.674-4.236
070.666-0.32-2.6290.227
08-0.5930.3220.235-0.22
090.0330.25-0.244-0.106
10-0.1280.265-0.024-0.173
11-0.005-0.208-0.1390.279
12-0.872-0.2690.5460.087
13-0.6280.813-0.895-0.22
14-0.7630.981-0.968-0.722
150.5840.147-1.446-0.208