Model info
Transcription factorNfkb1
ModelNFKB1_MOUSE.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length11
Quality
A
Motif rank
0
ConsensusGGGAAAbYCCC
Best auROC (human)0.72636228409042
Best auROC (mouse)0.9525950040482972
Peak sets in benchmark (human)7
Peak sets in benchmark (mouse)16
Aligned words503
TF familyNF-kappaB-related factors{6.1.1}
TF subfamilyNF-kappaB p50 subunit-like factors{6.1.1.1}
MGI97312
EntrezGene18033
UniProt IDNFKB1_MOUSE
UniProt ACP25799
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 3.993505
0.0005 5.04823
0.0001 7.27088
GTEx tissue expression atlas Nfkb1 expression
Motifs in JASPAR
PCM
ACGT
0125.04.0448.020.0
0234.04.0455.04.0
037.03.0478.09.0
04353.05.0136.03.0
05427.024.044.02.0
06468.01.028.00.0
0768.076.0130.0223.0
0853.0173.021.0250.0
0931.0454.08.04.0
1031.0458.01.07.0
1129.0435.016.017.0
PWM
ACGT
01-1.556-3.1211.274-1.764
02-1.264-3.1211.289-3.121
03-2.689-3.3191.338-2.478
041.036-2.9550.089-3.319
051.226-1.594-1.016-3.567
061.317-3.898-1.449-4.395
07-0.593-0.4840.0450.579
08-0.8360.328-1.7190.693
09-1.3521.287-2.578-3.121
10-1.3521.296-3.898-2.689
11-1.4151.244-1.97-1.914