Model info
Transcription factorNfkb1
ModelNFKB1_MOUSE.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length11
Quality
A
Motif rank
0
ConsensusGGGAAAbYCCC
Best auROC (human)0.726
Best auROC (mouse)0.953
Peak sets in benchmark (human)7
Peak sets in benchmark (mouse)16
Aligned words503
TF familyNF-kappaB-related factors {6.1.1}
TF subfamilyNF-kappaB p50 subunit-like factors {6.1.1.1}
MGIMGI:97312
EntrezGeneGeneID:18033
(SSTAR profile)
UniProt IDNFKB1_MOUSE
UniProt ACP25799
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 3.993505
0.0005 5.04823
0.0001 7.27088
GTEx tissue expression atlas Nfkb1 expression
Motifs in JASPAR
PCM
ACGT
0125.04.0448.020.0
0234.04.0455.04.0
037.03.0478.09.0
04353.05.0136.03.0
05427.024.044.02.0
06468.01.028.00.0
0768.076.0130.0223.0
0853.0173.021.0250.0
0931.0454.08.04.0
1031.0458.01.07.0
1129.0435.016.017.0
PWM
ACGT
01-1.556-3.1211.274-1.764
02-1.264-3.1211.289-3.121
03-2.689-3.3191.338-2.478
041.036-2.9550.089-3.319
051.226-1.594-1.016-3.567
061.317-3.898-1.449-4.395
07-0.593-0.4840.0450.579
08-0.8360.328-1.7190.693
09-1.3521.287-2.578-3.121
10-1.3521.296-3.898-2.689
11-1.4151.244-1.97-1.914