Model info
Transcription factorNfkb1
ModelNFKB1_MOUSE.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length11
Quality
A
Motif rank
0
ConsensusGGGAAAbYCCC
Best auROC (human)0.72636228409042
Best auROC (mouse)0.9525950040482972
Peak sets in benchmark (human)7
Peak sets in benchmark (mouse)16
Aligned words503
TF familyNF-kappaB-related factors{6.1.1}
TF subfamilyNF-kappaB p50 subunit-like factors{6.1.1.1}
MGI97312
EntrezGene18033
UniProt IDNFKB1_MOUSE
UniProt ACP25799
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 3.98451
0.0005 5.05383
0.0001 7.27224
GTEx tissue expression atlas Nfkb1 expression
ReMap ChIP-seq dataset list Nfkb1 datasets
Motifs in JASPAR
PCM
ACGT
0125.04.0448.020.0
0234.04.0455.04.0
037.03.0478.09.0
04353.05.0136.03.0
05427.024.044.02.0
06468.01.028.00.0
0768.076.0130.0223.0
0853.0173.021.0250.0
0931.0454.08.04.0
1031.0458.01.07.0
1129.0435.016.017.0
PWM
ACGT
01-1.556-3.1211.274-1.764
02-1.264-3.1211.289-3.121
03-2.689-3.3191.338-2.478
041.036-2.9550.089-3.319
051.226-1.594-1.016-3.567
061.317-3.898-1.449-4.395
07-0.593-0.4840.0450.579
08-0.8360.328-1.7190.693
09-1.3521.287-2.578-3.121
10-1.3521.296-3.898-2.689
11-1.4151.244-1.97-1.914