Model info
Transcription factorNKX2-2
ModelNKX22_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length8
Quality
D
Motif rank
0
ConsensusdSAGWGvh
Best auROC (human)0.49199189349970873
Best auROC (mouse)0.7889844094916818
Peak sets in benchmark (human)2
Peak sets in benchmark (mouse)5
Aligned words500
TF familyNK-related factors{3.1.2}
TF subfamilyNK-2.2{3.1.2.15}
HGNC7835
EntrezGene4821
UniProt IDNKX22_HUMAN
UniProt ACO95096
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.500675
0.0005 5.766640000000001
0.0001 6.218565
GTEx tissue expression atlas NKX2-2 expression
ReMap ChIP-seq dataset list NKX2-2 datasets
Motifs in JASPAR
PCM
ACGT
01152.035.0146.0167.0
02104.0135.0259.02.0
03489.01.06.04.0
04140.06.0351.03.0
05230.00.037.0233.0
064.00.0495.01.0
0749.0148.0263.040.0
08132.0195.034.0139.0
PWM
ACGT
010.193-1.2420.1540.287
02-0.1810.0760.722-3.573
031.355-3.903-2.819-3.126
040.112-2.8191.025-3.325
050.604-4.4-1.1890.617
06-3.126-4.41.367-3.903
07-0.9180.1670.737-1.114
080.0540.44-1.270.105