Model info
Transcription factorNKX2-5
ModelNKX25_HUMAN.H11MO.0.B
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length8
Quality
B
Motif rank
0
ConsensusbbRAGWGv
Best auROC (human)0.6974531751913174
Best auROC (mouse)0.8595901835627936
Peak sets in benchmark (human)2
Peak sets in benchmark (mouse)7
Aligned words499
TF familyNK-related factors{3.1.2}
TF subfamilyNK-4{3.1.2.17}
HGNC2488
EntrezGene1482
UniProt IDNKX25_HUMAN
UniProt ACP52952
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.508195000000001
0.0005 5.9641
0.0001 6.755
GTEx tissue expression atlas NKX2-5 expression
ReMap ChIP-seq dataset list NKX2-5 datasets
Motifs in JASPAR
PCM
ACGT
0153.082.0155.0209.0
0238.057.0268.0136.0
03211.017.0259.012.0
04489.08.00.02.0
0518.02.0479.00.0
06272.030.09.0188.0
0799.01.0384.015.0
0884.0151.0242.022.0
PWM
ACGT
01-0.84-0.4130.2150.511
02-1.161-0.7690.7580.085
030.521-1.9180.724-2.232
041.357-2.582-4.398-3.571
05-1.866-3.5711.336-4.398
060.773-1.387-2.4820.406
07-0.228-3.9011.116-2.032
08-0.390.1890.657-1.679