Model info
Transcription factorNkx2-5
ModelNKX25_MOUSE.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length10
Quality
A
Motif rank
0
ConsensusnbYbRAGWGS
Best auROC (human)0.6122130780007764
Best auROC (mouse)0.8958922095447284
Peak sets in benchmark (human)2
Peak sets in benchmark (mouse)7
Aligned words500
TF familyNK-related factors{3.1.2}
TF subfamilyNK-4{3.1.2.17}
MGI97350
EntrezGene18091
UniProt IDNKX25_MOUSE
UniProt ACP42582
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.21369
0.0005 6.1152999999999995
0.0001 7.556985000000001
GTEx tissue expression atlas Nkx2-5 expression
Motifs in JASPAR
PCM
ACGT
01111.079.0125.0185.0
029.0212.0175.0104.0
036.0133.069.0292.0
0417.0137.0177.0169.0
05191.020.0277.012.0
06498.00.01.01.0
071.03.0492.04.0
0891.028.09.0372.0
099.06.0469.016.0
1014.0167.0272.047.0
PWM
ACGT
01-0.117-0.4520.00.388
02-2.4840.5230.333-0.181
03-2.8190.061-0.5840.841
04-1.920.0910.3440.298
050.42-1.770.789-2.234
061.373-4.4-3.903-3.903
07-3.903-3.3251.361-3.126
08-0.313-1.454-2.4841.082
09-2.484-2.8191.313-1.975
10-2.0960.2870.771-0.958