Model info
Transcription factorNR1D1
ModelNR1D1_HUMAN.H11DI.0.B
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length19
Quality
B
Motif rank
0
ConsensusnvnvWbKRGGbCAvnndvn
Best auROC (human)0.5895890024011545
Best auROC (mouse)0.907370906458916
Peak sets in benchmark (human)1
Peak sets in benchmark (mouse)53
Aligned words508
TF familyThyroid hormone receptor-related factors (NR1){2.1.2}
TF subfamilyRev-ErbA (NR1D){2.1.2.3}
HGNC7962
EntrezGene9572
UniProt IDNR1D1_HUMAN
UniProt ACP20393
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 9.77066
0.0005 11.44411
0.0001 14.821860000000001
GTEx tissue expression atlas NR1D1 expression
ReMap ChIP-seq dataset list NR1D1 datasets
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0132.022.076.09.033.023.012.012.039.060.081.08.015.011.043.024.0
0244.013.045.017.028.052.018.018.070.012.086.044.013.08.018.014.0
03111.014.023.07.057.019.03.06.077.046.034.010.033.042.08.010.0
04181.07.023.067.072.03.014.032.017.05.036.010.011.01.08.013.0
0535.093.0107.046.07.01.04.04.015.043.014.09.010.060.036.016.0
069.04.017.037.026.018.021.0132.010.016.020.0115.03.05.030.037.0
0719.01.026.02.033.00.010.00.047.07.033.01.0108.02.0207.04.0
084.00.0193.010.01.00.09.00.09.03.0243.021.00.00.06.01.0
090.00.014.00.00.00.03.00.01.09.0431.010.00.00.030.02.0
100.00.00.01.02.03.00.04.026.091.0103.0258.01.02.01.08.0
113.025.00.01.04.089.00.03.018.080.05.01.07.0236.06.022.0
1229.01.02.00.0407.04.014.05.011.00.00.00.027.00.00.00.0
1360.0131.0243.040.01.02.00.02.01.08.06.01.00.02.03.00.0
1424.010.018.010.040.022.034.047.058.032.090.072.016.06.09.012.0
1534.021.055.028.024.029.08.09.054.034.035.028.036.07.079.019.0
1635.04.080.029.025.07.035.024.023.08.0104.042.06.06.042.030.0
1725.015.040.09.07.08.05.05.045.055.0131.030.017.027.061.020.0
1826.022.033.013.025.026.017.037.048.058.067.064.010.020.015.019.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.023-0.3460.881-1.2150.054-0.302-0.938-0.9380.2190.6460.945-1.328-0.721-1.0220.316-0.26
020.339-0.860.361-0.599-0.1080.504-0.543-0.5430.8-0.9381.0040.339-0.86-1.328-0.543-0.788
031.259-0.788-0.302-1.4540.595-0.49-2.234-1.60.8940.3830.083-1.1140.0540.293-1.328-1.114
041.746-1.454-0.3020.7560.828-2.234-0.7880.023-0.599-1.770.14-1.114-1.022-3.126-1.328-0.86
050.1121.0821.2220.383-1.454-3.126-1.975-1.975-0.7210.316-0.788-1.215-1.1140.6460.14-0.658
06-1.215-1.975-0.5990.167-0.181-0.543-0.3921.431-1.114-0.658-0.4391.294-2.234-1.77-0.040.167
07-0.49-3.126-0.181-2.5840.054-4.4-1.114-4.40.404-1.4540.054-3.1261.231-2.5841.88-1.975
08-1.975-4.41.81-1.114-3.126-4.4-1.215-4.4-1.215-2.2342.04-0.392-4.4-4.4-1.6-3.126
09-4.4-4.4-0.788-4.4-4.4-4.4-2.234-4.4-3.126-1.2152.613-1.114-4.4-4.4-0.04-2.584
10-4.4-4.4-4.4-3.126-2.584-2.234-4.4-1.975-0.1811.0611.1842.1-3.126-2.584-3.126-1.328
11-2.234-0.22-4.4-3.126-1.9751.039-4.4-2.234-0.5430.932-1.77-3.126-1.4542.011-1.6-0.346
12-0.074-3.126-2.584-4.42.555-1.975-0.788-1.77-1.022-4.4-4.4-4.4-0.144-4.4-4.4-4.4
130.6461.4242.040.244-3.126-2.584-4.4-2.584-3.126-1.328-1.6-3.126-4.4-2.584-2.234-4.4
14-0.26-1.114-0.543-1.1140.244-0.3460.0830.4040.6130.0231.050.828-0.658-1.6-1.215-0.938
150.083-0.3920.56-0.108-0.26-0.074-1.328-1.2150.5420.0830.112-0.1080.14-1.4540.92-0.49
160.112-1.9750.932-0.074-0.22-1.4540.112-0.26-0.302-1.3281.1940.293-1.6-1.60.293-0.04
17-0.22-0.7210.244-1.215-1.454-1.328-1.77-1.770.3610.561.424-0.04-0.599-0.1440.663-0.439
18-0.181-0.3460.054-0.86-0.22-0.181-0.5990.1670.4250.6130.7560.711-1.114-0.439-0.721-0.49