Model info
Transcription factorNr1d2
ModelNR1D2_MOUSE.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length18
Quality
A
Motif rank
0
ConsensusnvvdvWvTRRGTCAbnvn
Best auROC (human)
Best auROC (mouse)0.8977006495851158
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)12
Aligned words511
TF familyThyroid hormone receptor-related factors (NR1){2.1.2}
TF subfamilyRev-ErbA (NR1D){2.1.2.3}
MGI2449205
EntrezGene353187
UniProt IDNR1D2_MOUSE
UniProt ACQ60674
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 9.777260000000002
0.0005 11.54541
0.0001 15.22676
GTEx tissue expression atlas Nr1d2 expression
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0126.027.097.08.037.024.09.07.045.016.065.012.030.020.057.020.0
0233.010.082.013.033.027.014.013.055.023.0130.020.015.02.026.04.0
0342.07.069.018.022.014.01.025.055.07.0122.068.018.04.014.014.0
0489.021.023.04.016.05.04.07.0141.044.011.010.033.057.018.017.0
05185.04.012.078.073.09.07.038.018.013.08.017.08.02.08.020.0
0630.074.0157.023.04.09.012.03.010.015.07.03.016.045.074.018.0
070.02.06.052.03.04.05.0131.05.09.018.0218.02.04.017.024.0
087.00.02.01.08.00.010.01.027.00.019.00.0131.06.0284.04.0
0921.01.0146.05.03.00.03.00.0117.02.0154.042.01.00.04.01.0
104.013.0120.05.00.00.03.00.09.016.0280.02.01.04.042.01.0
114.01.03.06.02.01.01.029.04.013.030.0398.00.00.00.08.0
120.010.00.00.00.015.00.00.00.026.03.05.05.0412.011.013.0
134.00.00.01.0445.07.00.011.09.00.04.01.015.01.00.02.0
1460.0143.0186.084.03.02.00.03.00.02.02.00.02.02.09.02.0
1525.012.020.08.052.021.016.060.056.043.040.058.015.013.030.031.0
1626.023.083.016.034.026.016.013.026.022.036.022.029.016.087.025.0
1730.014.058.013.030.021.04.032.042.040.083.057.07.018.027.024.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.181-0.1441.124-1.3280.167-0.26-1.215-1.4540.361-0.6580.726-0.938-0.04-0.4390.595-0.439
020.054-1.1140.957-0.860.054-0.144-0.788-0.860.56-0.3021.416-0.439-0.721-2.584-0.181-1.975
030.293-1.4540.785-0.543-0.346-0.788-3.126-0.220.56-1.4541.3530.771-0.543-1.975-0.788-0.788
041.039-0.392-0.302-1.975-0.658-1.77-1.975-1.4541.4970.339-1.022-1.1140.0540.595-0.543-0.599
051.768-1.975-0.9380.9070.841-1.215-1.4540.193-0.543-0.86-1.328-0.599-1.328-2.584-1.328-0.439
06-0.040.8551.604-0.302-1.975-1.215-0.938-2.234-1.114-0.721-1.454-2.234-0.6580.3610.855-0.543
07-4.4-2.584-1.60.504-2.234-1.975-1.771.424-1.77-1.215-0.5431.932-2.584-1.975-0.599-0.26
08-1.454-4.4-2.584-3.126-1.328-4.4-1.114-3.126-0.144-4.4-0.49-4.41.424-1.62.196-1.975
09-0.392-3.1261.532-1.77-2.234-4.4-2.234-4.41.311-2.5841.5850.293-3.126-4.4-1.975-3.126
10-1.975-0.861.336-1.77-4.4-4.4-2.234-4.4-1.215-0.6582.182-2.584-3.126-1.9750.293-3.126
11-1.975-3.126-2.234-1.6-2.584-3.126-3.126-0.074-1.975-0.86-0.042.533-4.4-4.4-4.4-1.328
12-4.4-1.114-4.4-4.4-4.4-0.721-4.4-4.4-4.4-0.181-2.234-1.77-1.772.568-1.022-0.86
13-1.975-4.4-4.4-3.1262.645-1.454-4.4-1.022-1.215-4.4-1.975-3.126-0.721-3.126-4.4-2.584
140.6461.5111.7730.981-2.234-2.584-4.4-2.234-4.4-2.584-2.584-4.4-2.584-2.584-1.215-2.584
15-0.22-0.938-0.439-1.3280.504-0.392-0.6580.6460.5780.3160.2440.613-0.721-0.86-0.04-0.008
16-0.181-0.3020.969-0.6580.083-0.181-0.658-0.86-0.181-0.3460.14-0.346-0.074-0.6581.016-0.22
17-0.04-0.7880.613-0.86-0.04-0.392-1.9750.0230.2930.2440.9690.595-1.454-0.543-0.144-0.26