Model info
Transcription factorNr1h3
ModelNR1H3_MOUSE.H11MO.1.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length19
Quality
A
Motif rank
1
ConsensusvhvRGKYhAbhnnRGKdYA
Best auROC (human)0.7699411394926012
Best auROC (mouse)0.8597624991049764
Peak sets in benchmark (human)13
Peak sets in benchmark (mouse)10
Aligned words500
TF familyThyroid hormone receptor-related factors (NR1){2.1.2}
TF subfamilyLXR (NR1H){2.1.2.7}
MGI1352462
EntrezGene22259
UniProt IDNR1H3_MOUSE
UniProt ACQ9Z0Y9
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.055009999999999
0.0005 5.85521
0.0001 7.537660000000001
GTEx tissue expression atlas Nr1h3 expression
Motifs in JASPAR
PCM
ACGT
0184.0241.0104.071.0
02212.0112.062.0114.0
03187.063.0210.040.0
04272.013.0190.025.0
0561.03.0407.029.0
0619.022.0378.081.0
0732.079.076.0313.0
0872.0214.042.0172.0
09415.09.027.049.0
1057.0296.071.076.0
11112.089.043.0256.0
12120.0114.0145.0121.0
13114.0162.0142.082.0
14330.045.086.039.0
1540.013.0418.029.0
1653.020.0359.068.0
1776.069.0110.0245.0
1839.0369.036.056.0
19436.022.024.018.0
PWM
ACGT
01-0.3920.651-0.181-0.556
020.523-0.108-0.689-0.091
030.399-0.6730.514-1.114
040.771-2.1630.415-1.561
05-0.705-3.3251.172-1.421
06-1.818-1.6811.098-0.427
07-1.328-0.452-0.490.91
08-0.5430.533-1.0670.316
091.191-2.484-1.489-0.918
10-0.7710.855-0.556-0.49
11-0.108-0.335-1.0440.711
12-0.04-0.0910.147-0.032
13-0.0910.2560.126-0.415
140.963-1.0-0.368-1.138
15-1.114-2.1631.199-1.421
16-0.841-1.771.047-0.599
17-0.49-0.584-0.1260.667
18-1.1381.074-1.215-0.788
191.241-1.681-1.6-1.868