Model info
Transcription factorNr1i2
ModelNR1I2_MOUSE.H11MO.1.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length8
Quality
D
Motif rank
1
ConsensusdAGKTCAb
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words45
TF familyThyroid hormone receptor-related factors (NR1){2.1.2}
TF subfamilyVitamin D receptor (NR1I){2.1.2.4}
MGI1337040
EntrezGene18171
UniProt IDNR1I2_MOUSE
UniProt ACO54915
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.728899999999999
0.0005 6.529465
0.0001 7.737765
GTEx tissue expression atlas Nr1i2 expression
Motifs in JASPAR
PCM
ACGT
0121.3982.96614.9365.932
0234.2160.011.0170.0
030.00.045.2330.0
044.7670.08.79231.674
050.00.9530.044.28
060.042.1613.0720.0
0744.280.00.9530.0
084.55515.25411.22914.195
PWM
ACGT
010.6-1.1410.259-0.577
021.054-2.555-0.024-2.555
03-2.555-2.5551.326-2.555
04-0.762-2.555-0.230.979
05-2.555-1.861-2.5551.305
06-2.5551.257-1.114-2.555
071.305-2.555-1.861-2.555
08-0.80.279-0.0070.211