Model info
| Transcription factor | NR2E1 (GeneCards) | ||||||||
| Model | NR2E1_HUMAN.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | HT-SELEX | ||||||||
| Model release | HOCOMOCOv10 | ||||||||
| Model length | 17 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | MARKCAAdAAGTCAWbh | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 70 | ||||||||
| TF family | RXR-related receptors (NR2) {2.1.3} | ||||||||
| TF subfamily | Tailless-like receptors (NR2E) {2.1.3.3} | ||||||||
| HGNC | HGNC:7973 | ||||||||
| EntrezGene | GeneID:7101 (SSTAR profile) | ||||||||
| UniProt ID | NR2E1_HUMAN | ||||||||
| UniProt AC | Q9Y466 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | NR2E1 expression | ||||||||
| ReMap ChIP-seq dataset list | NR2E1 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 43.352 | 8.246 | 7.34 | 2.962 |
| 02 | 49.095 | 3.51 | 5.698 | 3.598 |
| 03 | 8.794 | 1.321 | 46.729 | 5.057 |
| 04 | 3.758 | 3.758 | 5.947 | 48.437 |
| 05 | 0.73 | 54.428 | 2.277 | 4.466 |
| 06 | 53.61 | 3.007 | 3.007 | 2.277 |
| 07 | 49.322 | 3.736 | 3.648 | 5.195 |
| 08 | 25.159 | 5.836 | 9.573 | 21.334 |
| 09 | 61.901 | 0.0 | 0.0 | 0.0 |
| 10 | 58.165 | 3.007 | 0.73 | 0.0 |
| 11 | 0.0 | 0.0 | 61.901 | 0.0 |
| 12 | 2.277 | 2.189 | 0.0 | 57.435 |
| 13 | 0.0 | 58.165 | 2.277 | 1.459 |
| 14 | 60.193 | 0.569 | 0.569 | 0.569 |
| 15 | 36.488 | 8.412 | 6.312 | 10.689 |
| 16 | 10.28 | 11.739 | 13.375 | 26.507 |
| 17 | 12.739 | 14.11 | 9.91 | 25.141 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.989 | -0.576 | -0.679 | -1.419 |
| 02 | 1.111 | -1.291 | -0.897 | -1.271 |
| 03 | -0.519 | -1.948 | 1.062 | -0.997 |
| 04 | -1.237 | -1.237 | -0.861 | 1.098 |
| 05 | -2.238 | 1.212 | -1.607 | -1.1 |
| 06 | 1.197 | -1.408 | -1.408 | -1.607 |
| 07 | 1.115 | -1.242 | -1.261 | -0.975 |
| 08 | 0.462 | -0.877 | -0.443 | 0.304 |
| 09 | 1.338 | -2.773 | -2.773 | -2.773 |
| 10 | 1.277 | -1.408 | -2.238 | -2.773 |
| 11 | -2.773 | -2.773 | 1.338 | -2.773 |
| 12 | -1.607 | -1.634 | -2.773 | 1.265 |
| 13 | -2.773 | 1.277 | -1.607 | -1.891 |
| 14 | 1.311 | -2.333 | -2.333 | -2.333 |
| 15 | 0.821 | -0.558 | -0.81 | -0.342 |
| 16 | -0.378 | -0.257 | -0.136 | 0.512 |
| 17 | -0.181 | -0.086 | -0.411 | 0.461 |