Model info
Transcription factorOTX2
ModelOTX2_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length11
Quality
A
Motif rank
0
ConsensusddRGGATTAdv
Best auROC (human)0.8629812601887465
Best auROC (mouse)0.8860210229806562
Peak sets in benchmark (human)5
Peak sets in benchmark (mouse)18
Aligned words500
TF familyPaired-related HD factors{3.1.3}
TF subfamilyOTX{3.1.3.17}
HGNC8522
EntrezGene5015
UniProt IDOTX2_HUMAN
UniProt ACP32243
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.335055
0.0005 6.1928
0.0001 7.955209999999999
GTEx tissue expression atlas OTX2 expression
ReMap ChIP-seq dataset list OTX2 datasets
Motifs in JASPAR
PCM
ACGT
01222.070.0128.080.0
02190.030.0209.071.0
03167.041.0264.028.0
04105.01.0386.08.0
0516.020.0462.02.0
06418.076.02.04.0
071.03.02.0494.0
087.010.04.0479.0
09442.02.011.045.0
10214.025.0201.060.0
11104.0179.0178.039.0
PWM
ACGT
010.569-0.570.023-0.439
020.415-1.3890.509-0.556
030.287-1.090.741-1.454
04-0.172-3.9031.119-2.584
05-1.975-1.771.298-3.573
061.199-0.49-3.573-3.126
07-3.903-3.325-3.5731.365
08-2.694-2.394-3.1261.334
091.254-3.573-2.311-1.0
100.533-1.5610.47-0.721
11-0.1810.3550.35-1.138