Model info
| Transcription factor | PATZ1 (GeneCards) | ||||||||
| Model | PATZ1_HUMAN.H11MO.1.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 9 | ||||||||
| Quality | C | ||||||||
| Motif rank | 1 | ||||||||
| Consensus | dGGGAGRRG | ||||||||
| Best auROC (human) | 0.859 | ||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | 6 | ||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 499 | ||||||||
| TF family | Factors with multiple dispersed zinc fingers {2.3.4} | ||||||||
| TF subfamily | MAZ-like factors {2.3.4.8} | ||||||||
| HGNC | HGNC:13071 | ||||||||
| EntrezGene | GeneID:23598 (SSTAR profile) | ||||||||
| UniProt ID | PATZ1_HUMAN | ||||||||
| UniProt AC | Q9HBE1 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | PATZ1 expression | ||||||||
| ReMap ChIP-seq dataset list | PATZ1 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 253.0 | 62.0 | 114.0 | 67.0 |
| 02 | 29.0 | 6.0 | 406.0 | 55.0 |
| 03 | 11.0 | 8.0 | 461.0 | 16.0 |
| 04 | 12.0 | 14.0 | 467.0 | 3.0 |
| 05 | 481.0 | 4.0 | 0.0 | 11.0 |
| 06 | 111.0 | 1.0 | 374.0 | 10.0 |
| 07 | 97.0 | 2.0 | 350.0 | 47.0 |
| 08 | 137.0 | 9.0 | 312.0 | 38.0 |
| 09 | 65.0 | 12.0 | 402.0 | 17.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.707 | -0.681 | -0.083 | -0.605 |
| 02 | -1.413 | -2.811 | 1.177 | -0.798 |
| 03 | -2.303 | -2.576 | 1.304 | -1.968 |
| 04 | -2.226 | -2.089 | 1.317 | -3.317 |
| 05 | 1.346 | -3.119 | -4.393 | -2.303 |
| 06 | -0.109 | -3.896 | 1.096 | -2.386 |
| 07 | -0.242 | -3.565 | 1.03 | -0.95 |
| 08 | 0.099 | -2.476 | 0.915 | -1.155 |
| 09 | -0.635 | -2.226 | 1.168 | -1.912 |