Model info
Transcription factorPbx2
ModelPBX2_MOUSE.H11MO.0.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length15
Quality
C
Motif rank
0
ConsensusKvMhKTGATTGWWKb
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words19
TF familyTALE-type homeo domain factors{3.1.4}
TF subfamilyPBX{3.1.4.4}
MGI1341793
EntrezGene18515
UniProt IDPBX2_MOUSE
UniProt ACO35984
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.68061
0.0005 6.37381
0.0001 7.80761
GTEx tissue expression atlas Pbx2 expression
Motifs in JASPAR
PCM
ACGT
010.7522.7966.6448.809
028.2971.9247.0951.684
0310.2223.9683.8480.962
049.8613.1271.0824.93
051.0820.9626.13310.823
061.0820.9620.016.956
070.9620.015.5132.525
0815.0320.03.0060.962
090.03.1270.015.873
102.0440.00.016.956
110.00.014.9114.089
1213.4680.6012.0442.886
135.1712.1650.011.665
143.1270.08.2977.576
153.2474.4497.5763.728
PWM
ACGT
01-1.305-0.440.2970.554
020.499-0.7240.356-0.819
030.692-0.154-0.18-1.173
040.658-0.351-1.1040.032
05-1.104-1.1730.2250.745
06-1.104-1.173-2.0091.171
07-1.173-2.0091.086-0.52
081.056-2.009-0.382-1.173
09-2.009-0.351-2.0091.108
10-0.68-2.009-2.0091.171
11-2.009-2.0091.048-0.128
120.951-1.412-0.68-0.415
130.074-0.637-2.0090.816
14-0.351-2.0090.4990.415
15-0.32-0.0560.415-0.206