Model info
Transcription factorPBX3
ModelPBX3_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length11
Quality
A
Motif rank
0
ConsensusWGAbdGRCRKb
Best auROC (human)0.940779421878286
Best auROC (mouse)
Peak sets in benchmark (human)17
Peak sets in benchmark (mouse)
Aligned words420
TF familyTALE-type homeo domain factors{3.1.4}
TF subfamilyPBX{3.1.4.4}
HGNC8634
EntrezGene5090
UniProt IDPBX3_HUMAN
UniProt ACP40426
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.74021
0.0005 5.52922
0.0001 7.10001
GTEx tissue expression atlas PBX3 expression
ReMap ChIP-seq dataset list PBX3 datasets
Motifs in JASPAR
PCM
ACGT
0178.027.063.0252.0
0217.08.0392.03.0
03399.04.09.08.0
0430.0110.0137.0143.0
0549.038.0103.0230.0
0616.015.0374.015.0
07244.022.0152.02.0
0818.0370.08.024.0
09229.07.0143.041.0
1024.044.0288.064.0
1140.0144.0179.057.0
PWM
ACGT
01-0.292-1.318-0.5010.867
02-1.75-2.4161.307-3.162
031.324-2.962-2.316-2.416
04-1.2180.0460.2630.305
05-0.746-0.992-0.0190.776
06-1.805-1.8641.26-1.864
070.835-1.5110.366-3.413
08-1.6971.249-2.416-1.429
090.772-2.5270.305-0.918
10-1.429-0.851.0-0.486
11-0.9420.3120.528-0.599