Model info
Transcription factorPitx1
ModelPITX1_MOUSE.H11MO.0.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length10
Quality
C
Motif rank
0
ConsensusdRGGATTAdv
Best auROC (human)0.529
Best auROC (mouse)0.875
Peak sets in benchmark (human)2
Peak sets in benchmark (mouse)4
Aligned words196
TF familyPaired-related HD factors {3.1.3}
TF subfamilyPITX {3.1.3.19}
MGIMGI:107374
EntrezGeneGeneID:18740
(SSTAR profile)
UniProt IDPITX1_MOUSE
UniProt ACP70314
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.5201899999999995
0.0005 6.460265
0.0001 7.85277
GTEx tissue expression atlas Pitx1 expression
Motifs in JASPAR
PCM
ACGT
0194.010.062.030.0
0252.00.0114.030.0
0331.00.0165.00.0
043.00.0192.01.0
05133.063.00.00.0
060.02.00.0194.0
074.04.01.0187.0
08141.01.05.049.0
0985.010.076.025.0
1038.076.057.025.0
PWM
ACGT
010.639-1.4920.23-0.474
020.058-3.6410.829-0.474
03-0.443-3.6411.196-3.641
04-2.455-3.6411.346-3.077
050.9820.245-3.641-3.641
06-3.641-2.719-3.6411.356
07-2.247-2.247-3.0771.32
081.04-3.077-2.0750.0
090.54-1.4920.43-0.648
10-0.2470.430.148-0.648