Model info
Transcription factorPKNOX1
ModelPKNX1_HUMAN.H11MO.0.B
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length11
Quality
B
Motif rank
0
ConsensusWGAbKGRCRSv
Best auROC (human)
Best auROC (mouse)0.9673791552090969
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)19
Aligned words480
TF familyTALE-type homeo domain factors{3.1.4}
TF subfamilyPKNOX{3.1.4.5}
HGNC9022
EntrezGene5316
UniProt IDPKNX1_HUMAN
UniProt ACP55347
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.543395
0.0005 5.438745
0.0001 7.25427
GTEx tissue expression atlas PKNOX1 expression
ReMap ChIP-seq dataset list PKNOX1 datasets
Motifs in JASPAR
PCM
ACGT
0171.043.050.0316.0
0220.025.0430.05.0
03456.06.013.05.0
0411.0129.0159.0181.0
0549.029.055.0347.0
0611.02.0462.05.0
07299.03.0174.04.0
0813.0449.02.016.0
09302.025.0104.049.0
1026.056.0353.045.0
1171.0169.0195.045.0
PWM
ACGT
01-0.516-1.004-0.8580.96
02-1.73-1.5211.267-2.922
031.326-2.78-2.123-2.922
04-2.2710.0710.2780.407
05-0.877-1.381-0.7651.053
06-2.271-3.5351.339-2.922
070.905-3.2870.368-3.088
08-2.1231.31-3.535-1.936
090.915-1.521-0.141-0.877
10-1.485-0.7481.071-0.96
11-0.5160.3390.481-0.96