Model info
Transcription factorPpara
ModelPPARA_MOUSE.H11MO.1.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length9
Quality
A
Motif rank
1
ConsensusSARAGGKSA
Best auROC (human)0.48340752617731086
Best auROC (mouse)0.8628272661439103
Peak sets in benchmark (human)5
Peak sets in benchmark (mouse)20
Aligned words500
TF familyThyroid hormone receptor-related factors (NR1){2.1.2}
TF subfamilyPPAR (NR1C){2.1.2.5}
MGI104740
EntrezGene19013
UniProt IDPPARA_MOUSE
UniProt ACP23204
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.381335
0.0005 6.263655
0.0001 8.049405
GTEx tissue expression atlas Ppara expression
Motifs in JASPAR
PCM
ACGT
0142.0299.0117.042.0
02453.021.014.012.0
03347.041.0107.05.0
04469.00.029.02.0
0522.03.0469.06.0
0610.01.0442.047.0
0712.041.0103.0344.0
0822.0396.048.034.0
09436.024.013.027.0
PWM
ACGT
01-1.0670.865-0.065-1.067
021.279-1.725-2.096-2.234
031.013-1.09-0.153-2.961
041.313-4.4-1.421-3.573
05-1.681-3.3251.313-2.819
06-2.394-3.9031.254-0.958
07-2.234-1.09-0.1911.004
08-1.6811.145-0.938-1.27
091.241-1.6-2.163-1.489