Model info
Transcription factorPPARG
ModelPPARG_HUMAN.H11MO.1.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length9
Quality
A
Motif rank
1
ConsensusSARAGKKhA
Best auROC (human)0.8080374166275291
Best auROC (mouse)0.8359890759986811
Peak sets in benchmark (human)53
Peak sets in benchmark (mouse)114
Aligned words500
TF familyThyroid hormone receptor-related factors (NR1){2.1.2}
TF subfamilyPPAR (NR1C){2.1.2.5}
HGNC9236
EntrezGene5468
UniProt IDPPARG_HUMAN
UniProt ACP37231
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.54397
0.0005 6.41177
0.0001 7.99484
GTEx tissue expression atlas PPARG expression
ReMap ChIP-seq dataset list PPARG datasets
Motifs in JASPAR
PCM
ACGT
0111.0388.076.025.0
02477.04.00.019.0
03287.07.0201.05.0
04437.00.061.02.0
0526.00.0469.05.0
0630.06.0383.081.0
0722.046.0147.0285.0
0864.0309.063.064.0
09443.021.010.026.0
PWM
ACGT
01-2.3111.124-0.49-1.561
021.33-3.126-4.4-1.818
030.824-2.6940.47-2.961
041.243-4.4-0.705-3.573
05-1.525-4.41.313-2.961
06-1.389-2.8191.111-0.427
07-1.681-0.9790.160.817
08-0.6580.898-0.673-0.658
091.256-1.725-2.394-1.525