Model info
Transcription factorPparg
ModelPPARG_MOUSE.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length17
Quality
A
Motif rank
0
ConsensushWbhRKGbSARAGGKhR
Best auROC (human)0.9585485721171688
Best auROC (mouse)0.9598681438621917
Peak sets in benchmark (human)53
Peak sets in benchmark (mouse)114
Aligned words500
TF familyThyroid hormone receptor-related factors (NR1){2.1.2}
TF subfamilyPPAR (NR1C){2.1.2.5}
MGI97747
EntrezGene19016
UniProt IDPPARG_MOUSE
UniProt ACP37238
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.227460000000001
0.0005 6.10706
0.0001 7.9180600000000005
GTEx tissue expression atlas Pparg expression
Motifs in JASPAR
PCM
ACGT
01273.084.061.082.0
02270.09.054.0167.0
0359.0176.0186.079.0
0459.059.058.0324.0
05199.014.0264.023.0
0650.01.0376.073.0
0783.011.0391.015.0
0853.093.0208.0146.0
0954.0288.0123.035.0
10450.018.022.010.0
11350.016.0126.08.0
12396.02.099.03.0
1348.00.0439.013.0
1437.03.0392.068.0
1517.061.0174.0248.0
1679.0259.077.085.0
17343.034.078.045.0
PWM
ACGT
010.774-0.392-0.705-0.415
020.763-2.484-0.8230.287
03-0.7370.3390.393-0.452
04-0.737-0.737-0.7540.945
050.46-2.0960.741-1.64
06-0.898-3.9031.093-0.529
07-0.403-2.3111.132-2.034
08-0.841-0.2910.5040.154
09-0.8230.828-0.016-1.242
101.272-1.868-1.681-2.394
111.022-1.9750.008-2.584
121.145-3.573-0.23-3.325
13-0.938-4.41.247-2.163
14-1.189-3.3251.135-0.599
15-1.92-0.7050.3270.679
16-0.4520.722-0.477-0.38
171.002-1.27-0.464-1.0