Model info
Transcription factorPparg
ModelPPARG_MOUSE.H11MO.1.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length10
Quality
A
Motif rank
1
ConsensusbSARAGGKSA
Best auROC (human)0.808997895945064
Best auROC (mouse)0.8377564201603427
Peak sets in benchmark (human)53
Peak sets in benchmark (mouse)114
Aligned words500
TF familyThyroid hormone receptor-related factors (NR1){2.1.2}
TF subfamilyPPAR (NR1C){2.1.2.5}
MGI97747
EntrezGene19016
UniProt IDPPARG_MOUSE
UniProt ACP37238
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.549659999999999
0.0005 6.310795000000001
0.0001 7.888145
GTEx tissue expression atlas Pparg expression
Motifs in JASPAR
PCM
ACGT
0177.0110.0199.0114.0
0222.0347.083.048.0
03480.06.01.013.0
04300.026.0164.010.0
05478.01.021.00.0
0638.00.0459.03.0
0712.04.0416.068.0
0821.064.0127.0288.0
0934.0346.064.056.0
10402.035.011.052.0
PWM
ACGT
01-0.477-0.1260.46-0.091
02-1.6811.013-0.403-0.938
031.336-2.819-3.903-2.163
040.868-1.5250.269-2.394
051.332-3.903-1.725-4.4
06-1.163-4.41.292-3.325
07-2.234-3.1261.194-0.599
08-1.725-0.6580.0160.828
09-1.271.01-0.658-0.788
101.16-1.242-2.311-0.86