Model info
Transcription factorPrdm16
ModelPRD16_MOUSE.H11MO.0.B
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length10
Quality
B
Motif rank
0
ConsensusbCCCAGRGvv
Best auROC (human)
Best auROC (mouse)0.8783153247403384
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)3
Aligned words501
TF familyFactors with multiple dispersed zinc fingers{2.3.4}
TF subfamilyEvi-1-like factors{2.3.4.14}
MGI1917923
EntrezGene70673
UniProt IDPRD16_MOUSE
UniProt ACA2A935
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.387475
0.0005 6.189385
0.0001 7.69939
GTEx tissue expression atlas Prdm16 expression
Motifs in JASPAR
PCM
ACGT
0134.0249.064.0153.0
0213.0410.08.069.0
0327.0392.04.077.0
0428.0462.01.09.0
05494.05.01.00.0
0643.04.0434.019.0
07133.07.0327.033.0
0878.09.0410.03.0
09158.090.0234.018.0
10246.0118.0101.035.0
PWM
ACGT
01-1.270.683-0.6580.2
02-2.1631.179-2.584-0.584
03-1.4891.135-3.126-0.477
04-1.4541.298-3.903-2.484
051.365-2.961-3.903-4.4
06-1.044-3.1261.236-1.818
070.061-2.6940.954-1.298
08-0.464-2.4841.179-3.325
090.232-0.3240.621-1.868
100.671-0.057-0.21-1.242