Model info
Transcription factorPrdm5
ModelPRDM5_MOUSE.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length15
Quality
A
Motif rank
0
ConsensusvvdGGWGvdSvdGKh
Best auROC (human)
Best auROC (mouse)0.9517914165007095
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)12
Aligned words500
TF familyMore than 3 adjacent zinc finger factors{2.3.3}
TF subfamilyunclassified{2.3.3.0}
MGI1918029
EntrezGene70779
UniProt IDPRDM5_MOUSE
UniProt ACQ9CXE0
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.38186
0.0005 5.43471
0.0001 7.49666
GTEx tissue expression atlas Prdm5 expression
Motifs in JASPAR
PCM
ACGT
01119.0188.0153.040.0
02195.0226.055.024.0
03101.035.0119.0245.0
040.00.0499.01.0
052.00.0494.04.0
06376.07.031.086.0
079.036.0445.010.0
08248.0105.0107.040.0
09133.053.0162.0152.0
1063.0312.073.052.0
11220.0170.086.024.0
12187.013.0207.093.0
133.03.0492.02.0
147.027.0383.083.0
15156.0101.034.0209.0
PWM
ACGT
01-0.0490.4040.2-1.114
020.440.587-0.805-1.6
03-0.21-1.242-0.0490.667
04-4.4-4.41.375-3.903
05-3.573-4.41.365-3.126
061.093-2.694-1.358-0.368
07-2.484-1.2151.261-2.394
080.679-0.172-0.153-1.114
090.061-0.8410.2560.193
10-0.6730.907-0.529-0.86
110.560.304-0.368-1.6
120.399-2.1630.5-0.291
13-3.325-3.3251.361-3.573
14-2.694-1.4891.111-0.403
150.219-0.21-1.270.509