Model info
Transcription factorPrdm9
ModelPRDM9_MOUSE.H11MO.0.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length19
Quality
C
Motif rank
0
ConsensushRnddGGYAGYAvCWbCWb
Best auROC (human)
Best auROC (mouse)0.9194999498255332
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)4
Aligned words490
TF familyFactors with multiple dispersed zinc fingers{2.3.4}
TF subfamilyunclassified{2.3.4.0}
MGI2384854
EntrezGene
UniProt IDPRDM9_MOUSE
UniProt ACQ96EQ9
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 3.8978599999999997
0.0005 5.002409999999999
0.0001 7.29356
GTEx tissue expression atlas Prdm9 expression
Motifs in JASPAR
PCM
ACGT
01251.0101.056.082.0
02303.048.098.041.0
03137.072.0171.0110.0
04254.033.0121.082.0
05136.031.0137.0186.0
0652.03.0401.034.0
07104.07.0368.011.0
0815.0270.02.0203.0
09424.00.060.06.0
1039.01.0446.04.0
1111.0243.08.0228.0
12446.06.033.05.0
1391.0117.0240.042.0
143.0486.00.01.0
15300.029.02.0159.0
1628.0160.0122.0180.0
1720.0430.015.025.0
18129.059.022.0280.0
1946.0122.0190.0132.0
PWM
ACGT
010.711-0.19-0.768-0.395
020.898-0.918-0.22-1.07
030.111-0.5230.33-0.106
040.723-1.278-0.012-0.395
050.103-1.3380.1110.413
06-0.84-3.3061.177-1.25
07-0.162-2.6751.092-2.291
08-2.0140.783-3.5540.5
091.233-4.383-0.701-2.799
10-1.118-3.8851.283-3.107
11-2.2910.679-2.5640.615
121.283-2.799-1.278-2.941
13-0.293-0.0450.666-1.047
14-3.3061.369-4.383-3.885
150.888-1.401-3.5540.258
16-1.4350.264-0.0040.381
17-1.751.247-2.014-1.542
180.051-0.717-1.6620.82
19-0.959-0.0040.4340.074