Model info
Transcription factorPTF1A
ModelPTF1A_HUMAN.H11MO.0.B
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length18
Quality
B
Motif rank
0
ConsensusvCAGCTGbbnbbbbYYhv
Best auROC (human)
Best auROC (mouse)0.963306690333155
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)20
Aligned words500
TF familyTal-related factors{1.2.3}
TF subfamilyTwist-like factors{1.2.3.2}
HGNC23734
EntrezGene256297
UniProt IDPTF1A_HUMAN
UniProt ACQ7RTS3
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.3415099999999995
0.0005 5.322509999999999
0.0001 7.331060000000001
GTEx tissue expression atlas PTF1A expression
ReMap ChIP-seq dataset list PTF1A datasets
Motifs in JASPAR
PCM
ACGT
0176.0223.0181.020.0
027.0477.06.010.0
03470.05.03.022.0
043.022.0383.092.0
0538.0434.011.017.0
067.02.01.0490.0
075.08.0467.020.0
0810.0222.0137.0131.0
0928.0212.060.0200.0
1074.0157.0119.0150.0
1141.0205.0125.0129.0
1267.0207.070.0156.0
1373.0116.0113.0198.0
1427.0173.068.0232.0
1536.0202.035.0227.0
1632.0301.066.0101.0
17121.0220.033.0126.0
1890.0242.088.080.0
PWM
ACGT
01-0.490.5730.366-1.77
02-2.6941.33-2.819-2.394
031.315-2.961-3.325-1.681
04-3.325-1.6811.111-0.302
05-1.1631.236-2.311-1.92
06-2.694-3.573-3.9031.357
07-2.961-2.5841.309-1.77
08-2.3940.5690.0910.046
09-1.4540.523-0.7210.465
10-0.5160.225-0.0490.18
11-1.090.490.00.031
12-0.6130.5-0.570.219
13-0.529-0.074-0.10.455
14-1.4890.322-0.5990.613
15-1.2150.475-1.2420.591
16-1.3280.872-0.628-0.21
17-0.0320.56-1.2980.008
18-0.3240.655-0.346-0.439