Model info
Transcription factorPtf1a
ModelPTF1A_MOUSE.H11MO.1.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length9
Quality
A
Motif rank
1
ConsensusRRCAGMTGK
Best auROC (human)
Best auROC (mouse)0.9304493897952447
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)20
Aligned words503
TF familyTal-related factors{1.2.3}
TF subfamilyTwist-like factors{1.2.3.2}
MGI1328312
EntrezGene19213
UniProt IDPTF1A_MOUSE
UniProt ACQ9QX98
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.0428999999999995
0.0005 5.705035
0.0001 7.41863
GTEx tissue expression atlas Ptf1a expression
Motifs in JASPAR
PCM
ACGT
01261.07.0186.046.0
0262.060.0365.013.0
0321.0458.016.05.0
04489.03.07.01.0
0511.08.0465.016.0
0690.0364.043.03.0
0762.04.06.0428.0
082.06.0476.016.0
0913.075.0310.0102.0
PWM
ACGT
010.73-2.6940.393-0.979
02-0.689-0.7211.063-2.163
03-1.7251.29-1.975-2.961
041.355-3.325-2.694-3.903
05-2.311-2.5841.305-1.975
06-0.3241.061-1.044-3.325
07-0.689-3.126-2.8191.222
08-3.573-2.8191.328-1.975
09-2.163-0.5030.901-0.201